Provide computable object representation and validation for gene fusions

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  • License: MIT
  • Author: Wagner Lab, Nationwide Childrens Hospital
  • Requires: Python >=3.7

Project description

FUSOR

FUSOR (FUSion Object Representation) provides modeling and validation tools for representing gene fusions in a flexible, computable structure.

Installation

To install FUSOR:

pip install fusor

For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.

Once installed, from the project root dir, just run:

pipenv lock
pipenv sync

Init coding style tests

Code style is managed by flake8 and checked prior to commit.

We use pre-commit to run conformance tests.

This ensures:

  • Check code style
  • Check for added large files
  • Detect AWS Credentials
  • Detect Private Key

Before first commit run:

pre-commit install

Running unit tests

Running unit tests is as easy as pytest.

pipenv run pytest

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for alex.phd from gravatar.com alex.phd Avatar for jsstevenson from gravatar.com jsstevenson Avatar for korikuzma from gravatar.com korikuzma

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT
  • Author: Wagner Lab, Nationwide Childrens Hospital
  • Requires: Python >=3.7

Release history Release notifications | RSS feed

0.4.4

0.4.3

0.4.2

0.4.1

0.4.0

0.3.0

0.2.1 yanked

Reason this release was yanked:

Included breaking changes even though versioning indicated it was only a patch

0.2.0

0.1.0

0.0.30.dev1 pre-release

0.0.28.dev1 pre-release

0.0.28.dev0 pre-release

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This version

0.0.4

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