"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
Project description
vrsatile-pydantic
Translation of the GA4GH VRS and VRSATILE schemas to a Pydantic data model
The ga4gh/vrsatile/pydantic repo depends on VRS and VRSATILE models, and therefore each ga4gh.vrsatile.pydantic package on PyPI uses a particular version of VRS and VRSATILE. The correspondences between the packages may be summarized as:
- 0.0.X ~ 1.2.X: ga4gh.vrsatile.pydantic 0.0.X tracks VRS 1.2.X and the VRSATILE latest
- 0.1.X ~ metaschema-updates: ga4gh.vrsatile.pydantic 0.1.X tracks VRS and VRSATILE metaschema-updates
Developer instructions
To install vrstaile-pydantic:
pip install ga4gh.vrsatile.pydantic
Following are sections include instructions specifically for developers.
For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.
Once installed, from the project root dir, just run:
pipenv lock
pipenv sync
Init coding style tests
Code style is managed by flake8 and checked prior to commit.
We use pre-commit to run conformance tests.
This ensures:
- Check code style
- Check for added large files
- Detect AWS Credentials
- Detect Private Key
Before first commit run:
pre-commit install
Running unit tests
Running unit tests is as easy as pytest.
pipenv run pytest
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