"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
Project description
vrsatile-pydantic
Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model
Developer instructions
To install vrstaile-pydantic:
pip install ga4gh.vrsatile.pydantic
Following are sections include instructions specifically for developers.
For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.
Once installed, from the project root dir, just run:
pipenv lock
pipenv sync
Init coding style tests
Code style is managed by flake8 and checked prior to commit.
We use pre-commit to run conformance tests.
This ensures:
- Check code style
- Check for added large files
- Detect AWS Credentials
- Detect Private Key
Before first commit run:
pre-commit install
Running unit tests
Running unit tests is as easy as pytest.
pipenv run pytest
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Close
Hashes for ga4gh.vrsatile.pydantic-0.1.dev2.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0165335b9303bdb65a87d04623470a9c8ea8309663cf063f20b064fc556b347d |
|
MD5 | 3c1e4c987689a78ba723918470703385 |
|
BLAKE2b-256 | 23f17901a91aab623d4f37b72640a678848fc867f17c981e1ae43200b8b07b30 |
Close
Hashes for ga4gh.vrsatile.pydantic-0.1.dev2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | be7d264491a17e9a29cb2a61366184d4fcfca583e2b73c5f44f93a806fb49fe8 |
|
MD5 | 0f84a9cc4c7e1f58dd86b7dca4c95ea5 |
|
BLAKE2b-256 | 5b4aac93ad73a947bb3dffadc6360f6fef403a060d68978fb36e321597747347 |