"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
Project description
vrsatile-pydantic
Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model
Developer instructions
To install vrstaile-pydantic:
pip install ga4gh.vrsatile.pydantic
Following are sections include instructions specifically for developers.
For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.
Once installed, from the project root dir, just run:
pipenv lock
pipenv sync
Init coding style tests
Code style is managed by flake8 and checked prior to commit.
We use pre-commit to run conformance tests.
This ensures:
- Check code style
- Check for added large files
- Detect AWS Credentials
- Detect Private Key
Before first commit run:
pre-commit install
Running unit tests
Running unit tests is as easy as pytest.
pipenv run pytest
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file ga4gh.vrsatile.pydantic-0.1.dev2.tar.gz.
File metadata
- Download URL: ga4gh.vrsatile.pydantic-0.1.dev2.tar.gz
- Upload date:
- Size: 12.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.10.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 0165335b9303bdb65a87d04623470a9c8ea8309663cf063f20b064fc556b347d |
|
| MD5 | 3c1e4c987689a78ba723918470703385 |
|
| BLAKE2b-256 | 23f17901a91aab623d4f37b72640a678848fc867f17c981e1ae43200b8b07b30 |
Provenance
File details
Details for the file ga4gh.vrsatile.pydantic-0.1.dev2-py3-none-any.whl.
File metadata
- Download URL: ga4gh.vrsatile.pydantic-0.1.dev2-py3-none-any.whl
- Upload date:
- Size: 12.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.10.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | be7d264491a17e9a29cb2a61366184d4fcfca583e2b73c5f44f93a806fb49fe8 |
|
| MD5 | 0f84a9cc4c7e1f58dd86b7dca4c95ea5 |
|
| BLAKE2b-256 | 5b4aac93ad73a947bb3dffadc6360f6fef403a060d68978fb36e321597747347 |
