"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
Project description
vrsatile-pydantic
Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model
Developer instructions
To install vrstaile-pydantic:
pip install ga4gh.vrsatile.pydantic
Following are sections include instructions specifically for developers.
For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.
Once installed, from the project root dir, just run:
pipenv lock
pipenv sync
Init coding style tests
Code style is managed by flake8 and checked prior to commit.
We use pre-commit to run conformance tests.
This ensures:
- Check code style
- Check for added large files
- Detect AWS Credentials
- Detect Private Key
Before first commit run:
pre-commit install
Running unit tests
Running unit tests is as easy as pytest.
pipenv run pytest
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Close
Hashes for ga4gh.vrsatile.pydantic-0.1.dev5.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 841f265161011f5b3c87ca15c01b73736c658b6fb2f91ad144874f09f574088e |
|
MD5 | 31e987eb432601619212365d0ab26254 |
|
BLAKE2b-256 | cc498b79b659cecdee73462e2b523d4a57b5cd99b42564db4b284fb81be228e4 |
Close
Hashes for ga4gh.vrsatile.pydantic-0.1.dev5-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 20090d1f6880452ccb00a7de23b0948924d03f1844900d6e6663e6327f5eb7bf |
|
MD5 | da1375cc03a3adfa01496d8b0422c5dc |
|
BLAKE2b-256 | 1b161291422da0ef66f348d2fd9dcd0fb7c63b5123e18c1fc76966adb9cc0cf3 |