galaxy-data 23.1.1

Fix bad auto-merge of dev. by @jmchilton in #15386

Merge conflicting db migration branches into one by @jdavcs in #15771

Enable strict_equality mypy option by @nsoranzo in #15808

Fix revision scripts, run migrations in CI, add repair option, improve migrations utils by @jdavcs in #15811

Fix anonymous user uploads when vault is configured by @tchaussepiedifb in #15858

Fix nullable deleted column in API Keys table by @davelopez in #15956

Attempt to fix mypy check by @davelopez in #16103

Ensure session is request-scoped for legacy endpoints by @jdavcs in #16207

Reset autocommit to True (temporarily) by @jdavcs in #16283

Update 23.1 release tags for migration scripts by @jdavcs in #16294

Fix form builder value handling by @guerler in #16304

Fix tags ownership by @davelopez in #16339

Fix disk usage recalculation for distributed object stores by @mvdbeek in #16380

Job cache fixes for DCEs by @mvdbeek in #16384

Fix histories count by @davelopez in #16400

Fix double-encoding notification content by @mvdbeek in #16530

Optimize getting current user session by @mvdbeek in #16604

Fixes for conditional subworkflow steps by @mvdbeek in #16632

Copy the collection contents by default when copying a collection by @mvdbeek in #16717

Fix allowlist deserialization in file sources by @mvdbeek in #16729

Fix workflow output display without label by @mvdbeek in #16749

Fix and prevent persisting null file_size by @mvdbeek in #16855

Fix workflow import losing tool_version by @mvdbeek in #16869

Remove more flushes in database operation tools by @mvdbeek in #16875

Fix join condition for nested collection query by @mvdbeek in #16880

Empower Users to Select Storage Destination by @jmchilton in #14073

Add Storage Dashboard visualizations for histories by @davelopez in #14820

Towards decoupling datatypes and model by @jdavcs in #15186

Add Storage Management API by @davelopez in #15295

OIDC tokens by @SergeyYakubov in #15300

Expose additional beaker caching backends by @claudiofr in #15349

Follow up to #15186 by @jdavcs in #15388

Add support for visualizing HDF5 datasets. by @jarrah42 in #15394

Towards SQLAlchemy 2.0: drop session autocommit setting by @jdavcs in #15421

Update Python dependencies by @galaxybot in #15435

Unify url handling with filesources by @nuwang in #15497

Move TS to Alembic by @jdavcs in #15509

Update Python dependencies by @galaxybot in #15564

Update database_heartbeat for SA 2.0 compatibility by @jdavcs in #15611

Update supports_skip_locked, supports_returning for SA 2.0 compatibility by @jdavcs in #15633

Add Galaxy Notification System by @davelopez in #15663

Drop model mapping unit tests by @jdavcs in #15669

Add transactional state to workflow scheduling manager by @jdavcs in #15683

Remove DELETED_NEW job state from code base by @jdavcs in #15690

Fix/Enhance recalculate disk usage API endpoint by @davelopez in #15739

Drop database views by @jdavcs in #15876

Update Python dependencies by @galaxybot in #15890

FITS data format by @volodymyrss in #15905

Improve display chunk generation for BAMs by @wm75 in #15972

Add History Archival feature by @davelopez in #16003

Add alter_column migration utility by @jdavcs in #16009

Code cleanups from ruff and pyupgrade by @nsoranzo in #16035

Add missing fields to HistorySummary schema model by @davelopez in #16041

Dataset chunking tests (and small fixes) by @jmchilton in #16069

Add create_foreign_key migration utility by @jdavcs in #16077

Refactor models enums to eliminate schema dependency on model layer. by @jmchilton in #16080

Use automated naming convention to generate indexes and constraints in database by @jdavcs in #16089

Add zipped mongodb and genenotebook datatypes by @abretaud in #16173

Drop workarounds for old ro-crate-py and docutils versions by @mvdbeek in #16198

bring grids for (published) pages on par with workflows by @martenson in #16209

Add Visium datatype for squidpy and spatialomics tools by @astrovsky01 in #16255

Filter deleted keys from api_keys relationship by @dannon in #16321

Increase CustosAuthnzToken.external_user_id column size by @davelopez in #16818

Follow up on object store selection PR. by @jmchilton in #15654

Fix Enums in API docs by @davelopez in #15740

merge release_23.0 into dev by @martenson in #15830

Fix linting of FITS datatype code by @mvdbeek in #16169

backport of pysam tostring by @martenson in #16822