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Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.

Project description

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A small subset of the Galaxy project for reuse outside the core. This subset has minimal dependencies and should be Python 3 compatible.

History

17.1.0 (2016-12-12)

  • Improved mulled logging thanks to @bgruening.

  • Bring in the latest Galaxy dev changes.

16.10.10 (2016-10-24)

  • Fix mulled package data fetching for Mac OS X (thanks to @dannon).

16.10.9 (2016-10-21)

  • Small fixes including to reflect mulled name on quay.io changed to biocontainers.

16.10.8 (2016-10-10)

  • More mulled enhancements and bug fixes thanks to @bgruening and @daler.

16.10.7 (2016-10-08)

  • More mulled enhancements and bug fixes thanks to @bgruening.

  • Fix bioconda support by adding conda-forge to list of default channels.

16.10.6 (2016-10-07)

  • More mulled enhancements thanks to @bgruening.

16.10.5 (2016-10-04)

  • Some docstring cleanup and minor tweaks to Conda support for downstream planemo mulled work.

16.10.4 (2016-10-03)

  • More mulled fixes and enhancements.

16.10.3 (2016-10-02)

  • Small mulled and Conda related fix and enhancements.

16.10.2 (2016-09-30)

  • Fix setup.py for features in 16.10.1.

16.10.1 (2016-09-29)

  • Updates for recents changes to Galaxy and initial mulled scripts and container resolver.

16.10.0 (2016-08-31)

  • Updates for recent changes to Galaxy.

16.7.10 (2016-08-04)

  • Updates for recent change to Galaxy.

16.7.9 (2016-06-13)

  • Updates for recent changes to Galaxy and cwltool.

16.7.8 (2016-06-05)

  • Updates to include Galaxy library for verifying test outputs and the latest dev changes to Galaxy.

16.7.7 (2016-05-23)

  • Fixes to CWL and Docker libraries for Planemo.

16.7.6 (2016-05-11)

  • Fixes to cwl processing for Planemo.

16.7.5 (2016-05-11)

  • Updates to cwl processing for Planemo.

16.7.4 (2016-05-10)

  • Updates to cwl processing for Planemo.

16.7.3 (2016-05-07)

  • Updates to cwltool_deps for Planemo.

16.7.2 (2016-05-06)

  • Updates to tool parsing and linting for Planemo.

16.7.1 (2016-05-02)

  • Update against the latest development branch of Galaxy.

16.7.0 (2016-04-21)

  • Update against the latest development branch of Galaxy.

16.4.1 (2016-04-08)

  • Update against the latest development branch of Galaxy.

16.4.0 (2016-02-15)

  • Update against the latest development branch of Galaxy.

16.1.9 (2016-01-14)

  • Fix a bug in the source distribution of galaxy-lib.

16.1.8 (2016-01-12)

  • Update against Galaxy’s release_16.01 branch.

16.1.7 (2016-01-03)

  • Update against Galaxy’s dev branch - including conda updates, dependency resolution changes, and toolbox updates.

16.1.6 (2015-12-28)

  • Additional fixes to setup.py and updates for recent changes to Galaxy’s dev branch.

16.1.5 (2015-12-22)

  • Fix another bug that was preventing dependency resolution from working in Pulsar.

16.1.4 (2015-12-22)

  • Another setup.py fix for job metrics module.

16.1.3 (2015-12-22)

  • Python 3 fixes and updates for recent Galaxy dev commits.

16.1.2 (2015-12-21)

  • Fix for missing galaxy.tools.parser package in setup.py.

  • Fix LICENSE in repository.

16.1.1 (2015-12-20)

  • Fix small issues with dependencies, naming, and versioning with first release.

16.1.0 (2015-12-20)

  • Setup project.

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