Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
Project description
A small subset of the Galaxy project for reuse outside the core. This subset has minimal dependencies and should be Python 3 compatible.
Free software: Academic Free License version 3.0
Documentation: https://galaxy-lib.readthedocs.org.
History
17.5.8 (2017-04-23)
Fix mulled image cleanup. #55.
17.5.7 (2017-03-15)
Updates to CWL library functionality for several months worth of CWL tool updates.
Allow finding tools by a URI-like strings (e.g. file://, http://, dockstore://).
Bring in latest Galaxy updates.
17.5.6 (2017-03-01)
Expanded options for mulled CLI tools and library functionality. Fixes #49.
17.5.5 (2017-02-26)
Fix bug in 17.5.4 where under certain conditions conda-build would attempt to be setup with the conda –use-local flag - which is not allowed.
17.5.4 (2017-02-26)
Fix local builds Conda support to reflect conda-build is required.
Fix default target path for miniconda installs.
17.5.3 (2017-02-24)
Update against the latest Galaxy dev branch changes.
Update Conda utilities to allow using locally built packages.
17.5.2 (2017-02-21)
Conda utility enhancements to fix a Planemo bug.
17.5.1 (2017-02-21)
Various improvements to Galaxy tool linting.
17.5.0 (2017-02-16)
Bring in the last of the Galaxy dev changes.
Allow Conda installs to target global Conda config (for Planemo)
17.1.2 (2017-01-23)
Bring in the last of the Galaxy dev changes before branch of release_17.01.
Improvements to mulled testing thanks to @mvdbeek.
17.1.1 (2016-12-14)
Revert changes to shell command execution in Galaxy that had unintended consequences for Planemo.
17.1.0 (2016-12-12)
Improved mulled logging thanks to @bgruening.
Bring in the latest Galaxy dev changes.
16.10.10 (2016-10-24)
Fix mulled package data fetching for Mac OS X (thanks to @dannon).
16.10.9 (2016-10-21)
Small fixes including to reflect mulled name on quay.io changed to biocontainers.
16.10.8 (2016-10-10)
More mulled enhancements and bug fixes thanks to @bgruening and @daler.
16.10.7 (2016-10-08)
More mulled enhancements and bug fixes thanks to @bgruening.
Fix bioconda support by adding conda-forge to list of default channels.
16.10.6 (2016-10-07)
More mulled enhancements thanks to @bgruening.
16.10.5 (2016-10-04)
Some docstring cleanup and minor tweaks to Conda support for downstream planemo mulled work.
16.10.4 (2016-10-03)
More mulled fixes and enhancements.
16.10.3 (2016-10-02)
Small mulled and Conda related fix and enhancements.
16.10.2 (2016-09-30)
Fix setup.py for features in 16.10.1.
16.10.1 (2016-09-29)
Updates for recents changes to Galaxy and initial mulled scripts and container resolver.
16.10.0 (2016-08-31)
Updates for recent changes to Galaxy.
16.7.10 (2016-08-04)
Updates for recent change to Galaxy.
16.7.9 (2016-06-13)
Updates for recent changes to Galaxy and cwltool.
16.7.8 (2016-06-05)
Updates to include Galaxy library for verifying test outputs and the latest dev changes to Galaxy.
16.7.7 (2016-05-23)
Fixes to CWL and Docker libraries for Planemo.
16.7.6 (2016-05-11)
Fixes to cwl processing for Planemo.
16.7.5 (2016-05-11)
Updates to cwl processing for Planemo.
16.7.4 (2016-05-10)
Updates to cwl processing for Planemo.
16.7.3 (2016-05-07)
Updates to cwltool_deps for Planemo.
16.7.2 (2016-05-06)
Updates to tool parsing and linting for Planemo.
16.7.1 (2016-05-02)
Update against the latest development branch of Galaxy.
16.7.0 (2016-04-21)
Update against the latest development branch of Galaxy.
16.4.1 (2016-04-08)
Update against the latest development branch of Galaxy.
16.4.0 (2016-02-15)
Update against the latest development branch of Galaxy.
16.1.9 (2016-01-14)
Fix a bug in the source distribution of galaxy-lib.
16.1.8 (2016-01-12)
Update against Galaxy’s release_16.01 branch.
16.1.7 (2016-01-03)
Update against Galaxy’s dev branch - including conda updates, dependency resolution changes, and toolbox updates.
16.1.6 (2015-12-28)
Additional fixes to setup.py and updates for recent changes to Galaxy’s dev branch.
16.1.5 (2015-12-22)
Fix another bug that was preventing dependency resolution from working in Pulsar.
16.1.4 (2015-12-22)
Another setup.py fix for job metrics module.
16.1.3 (2015-12-22)
Python 3 fixes and updates for recent Galaxy dev commits.
16.1.2 (2015-12-21)
Fix for missing galaxy.tools.parser package in setup.py.
Fix LICENSE in repository.
16.1.1 (2015-12-20)
Fix small issues with dependencies, naming, and versioning with first release.
16.1.0 (2015-12-20)
Setup project.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
File details
Details for the file galaxy-lib-17.5.8.tar.gz.
File metadata
- Download URL: galaxy-lib-17.5.8.tar.gz
- Upload date:
- Size: 211.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 467615a8f427b1fb36ac7a5cd2ef15f1e5b141e4511e81425f0d3f83d250a12e |
|
| MD5 | 9ffe7538697d8d1c5713ac5f05a6f23c |
|
| BLAKE2b-256 | 1ca7918e489b5e7ebc4bdfe0f2d8e10dcae3e02f0bdecf3d5c344e5b37eee4ab |
File details
Details for the file galaxy_lib-17.5.8-py2.py3-none-any.whl.
File metadata
- Download URL: galaxy_lib-17.5.8-py2.py3-none-any.whl
- Upload date:
- Size: 265.6 kB
- Tags: Python 2, Python 3
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 28758fbddef3108e8ea458b87a5a9cf20c695f19b9d44ebe613af49d5d3d3798 |
|
| MD5 | 9674c49c0fb6651dba0488be03081c34 |
|
| BLAKE2b-256 | 9f2f915345fcb3706c7719d862399e393ddb64dd36aa988158ec948fd56d9c97 |
File details
Details for the file galaxy_lib-17.5.8-py2.7.egg.
File metadata
- Download URL: galaxy_lib-17.5.8-py2.7.egg
- Upload date:
- Size: 616.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1c9d2758b999b5cac9255d30f2b585e6485b1442ac01c92f2ff6801c74bcbef0 |
|
| MD5 | 61cfe61b447cf0b986ff1fb70acc94d8 |
|
| BLAKE2b-256 | 88ae1e4fef71e4b50478b122357cefa0f171b5b7e8008cb70e3a2d9e96e46849 |
