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Galaxy API tests

Project description

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Overview

The Galaxy API tests.

History

24.1.3 (2024-10-25)

Bug fixes

  • Fix subwofklow tags serialization type by @arash77 in #18456

  • Prevent job submission if input collection element is deleted by @mvdbeek in #18517

  • Fix view parameter type in Job index API by @davelopez in #18521

  • Fix map over calculation for runtime inputs by @mvdbeek in #18535

  • Fix Archive header encoding by @arash77 in #18583

  • Don’t set file size to zero by @mvdbeek in #18653

  • Fix extract workflow from history when implicit collection has no jobs by @mvdbeek in #18661

  • Fix change datatype PJA on expression tool data outputs by @mvdbeek in #18691

  • Fix subworkflow scheduling for delayed subworkflow steps connected to data inputs by @mvdbeek in #18731

  • Catch and display exceptions when importing malformatted yaml workflows by @mvdbeek in #18734

  • Fix infinitely delayed workflow scheduling if skipped step creates HDCA by @mvdbeek in #18751

  • Fix copying workflow with subworkflow step for step that you own by @mvdbeek in #18802

  • Raise MessageException instead of assertions on rerun problems by @mvdbeek in #18858

  • Fix data_column ref to nested collection by @mvdbeek in #18875

  • Access tool data table filters in workflow building mode by @mvdbeek in #18900

24.1.2 (2024-09-25)

Bug fixes

  • Prevent job submission if input collection element is deleted by @mvdbeek in #18517

  • Fix view parameter type in Job index API by @davelopez in #18521

  • Fix map over calculation for runtime inputs by @mvdbeek in #18535

  • Fix Archive header encoding by @arash77 in #18583

  • Don’t set file size to zero by @mvdbeek in #18653

  • Fix extract workflow from history when implicit collection has no jobs by @mvdbeek in #18661

  • Fix change datatype PJA on expression tool data outputs by @mvdbeek in #18691

  • Fix subworkflow scheduling for delayed subworkflow steps connected to data inputs by @mvdbeek in #18731

  • Catch and display exceptions when importing malformatted yaml workflows by @mvdbeek in #18734

  • Fix infinitely delayed workflow scheduling if skipped step creates HDCA by @mvdbeek in #18751

  • Fix copying workflow with subworkflow step for step that you own by @mvdbeek in #18802

  • Raise MessageException instead of assertions on rerun problems by @mvdbeek in #18858

  • Fix data_column ref to nested collection by @mvdbeek in #18875

24.1.1 (2024-07-02)

Bug fixes

Enhancements

24.0.3 (2024-06-28)

Bug fixes

24.0.2 (2024-05-07)

Bug fixes

  • Improve error message for Extract dataset tool by @mvdbeek in #18078

24.0.1 (2024-05-02)

Bug fixes

  • Fix tool version switch in editor by @mvdbeek in #17858

  • Fix workflow run form failing on certain histories by @mvdbeek in #17869

  • Always serialize element_count and populated when listing contents by @mvdbeek in #17890

  • Make wait_for_history_jobs look at jobs, not datasets by @mvdbeek in #17892

  • Fix missing implicit conversion for mapped over jobs by @mvdbeek in #17952

  • Fix get_content_as_text for compressed text datatypes by @mvdbeek in #17976

  • Raise appropriate exception if user forces a collection that is not populated with elements as input by @mvdbeek in #18023

  • Fix test_get_tags_histories_content test by @mvdbeek in #18026

  • Ensure that offset and limit are never negative by @mvdbeek in #18044

  • Fix history update time after bulk operation by @davelopez in #18068

24.0.0 (2024-04-02)

Bug fixes

  • Only check access permissions in /api/{history_dataset_collection_id}/contents/{dataset_collection_id} by @ahmedhamidawan in #17444

  • Fix test_index_advanced_filter API test re-running by @nsoranzo in #17547

  • Limit new anon histories by @mvdbeek in #17657

  • Fix step type serialization for StoredWorkflowDetailed models by @mvdbeek in #17716

  • Fix histories API index_query serialization by @davelopez in #17726

  • Fix source history update_time being updated when importing a public history by @jmchilton in #17728

  • Also set extension and metadata on copies of job outputs when finishing job by @mvdbeek in #17777

  • Fix change_datatype PJA for dynamic collections by @mvdbeek in #17803

  • Fix archived histories mixing with active in histories list by @davelopez in #17856

Enhancements

23.2.1 (2024-02-21)

Bug fixes

  • Fix: serialize tool_shed_urls directly from the API by @davelopez in #16561

  • Restore ToolsApi and create new api route for new panel structure by @ahmedhamidawan in #16872

  • Ruff and flake8 fixes by @nsoranzo in #16884

  • Make payload optional again for create tag API by @nsoranzo in #17144

  • Only check access permissions in /api/{history_dataset_collection_id}/contents/{dataset_collection_id} by @mvdbeek in #17459

Enhancements

Other changes

23.1.4 (2024-01-04)

Bug fixes

23.1.3 (2023-12-01)

No recorded changes since last release

23.1.2 (2023-11-29)

Bug fixes

  • Skip state filtering in __MERGE_COLLECTION__ tool by @mvdbeek in #16937

  • Fix duplicated tools in tool panel view section copying by @jmchilton in #17036

Enhancements

23.1.1 (2023-10-23)

Bug fixes

Enhancements

23.0.6 (2023-10-23)

No recorded changes since last release

23.0.5 (2023-07-29)

No recorded changes since last release

23.0.4 (2023-06-30)

No recorded changes since last release

23.0.3 (2023-06-26)

No recorded changes since last release

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

Bug fixes

  • Display DCE in job parameter component, allow rerunning with DCE input by @mvdbeek in #15744

  • Fix folder listing via file browser by @mvdbeek in #15950

  • Fix case sensitive filtering by name in histories by @davelopez in #16036

  • Fix dataype_change not updating HDCA update_time by @mvdbeek in #16099

  • Extract HDA for code_file validate_input hook by @mvdbeek in #16120

Enhancements

  • Add support for launching workflows via Tutorial Mode by @hexylena in #15684

  • Allow setting auto_decompress property in staging interface by @mvdbeek in #16014

20.9.0 (2020-10-15)

  • Initial import from dev branch of Galaxy during 20.09 branch of Galaxy.

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