Galaxy generic utilities
Project description
Overview
The Galaxy utilities module.
History
24.1.2 (2024-09-25)
Bug fixes
Enhancements
24.1.1 (2024-07-02)
Bug fixes
Fix bug in image_util.py by @kostrykin in #17749
Enhancements
Better display of estimated line numbers and add number of columns for tabular by @bernt-matthias in #17492
Update Python dependencies by @galaxybot in #17653
Code cleanups from ruff and pyupgrade by @nsoranzo in #17654
Error reporting unit tests by @jmchilton in #17968
Enable warn_unused_ignores mypy option by @nsoranzo in #17991
Update Python dependencies by @galaxybot in #18063
Enable flake8-implicit-str-concat ruff rules by @nsoranzo in #18067
Overhaul Azure storage infrastructure. by @jmchilton in #18087
Empower users to bring their own storage and file sources by @jmchilton in #18127
Harden User Object Store and File Source Creation by @jmchilton in #18172
24.0.3 (2024-06-28)
Bug fixes
24.0.2 (2024-05-07)
Bug fixes
24.0.1 (2024-05-02)
Bug fixes
24.0.0 (2024-04-02)
Bug fixes
Enhancements
Remove web framework dependency from tools by @davelopez in #17058
Add support for (fast5.tar).xz binary compressed files by @tuncK in #17106
Reuse test instance during non-integration tests by @mvdbeek in #17234
Add OIDC backend configuration schema and validation by @uwwint in #17274
Fix type annotation of code using XML etree by @nsoranzo in #17367
Add image_diff comparison method for test output verification using images by @kostrykin in #17556
23.2.1 (2024-02-21)
Bug fixes
Enhancements
Tool Shed 2.0 by @jmchilton in #15639
Move database access code out of galaxy.util by @jdavcs in #16526
Tweak tool memory use and optimize shared memory when using preload by @mvdbeek in #16536
Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by @sveinugu in #16795
Allow partial matches in workflow name tag search and search all tags for unquoted query by @ahmedhamidawan in #16860
Use python-isal for fast zip deflate compression in rocrate export by @mvdbeek in #17342
Other changes
23.1.4 (2024-01-04)
No recorded changes since last release
23.1.3 (2023-12-01)
No recorded changes since last release
23.1.2 (2023-11-29)
Enhancements
23.1.1 (2023-10-23)
Bug fixes
Fix bad auto-merge of dev. by @jmchilton in #15386
Ensure session is request-scoped for legacy endpoints by @jdavcs in #16207
Workaround for XML nodes of job resource parameters losing their children by @kysrpex in #16728
Fix allowlist deserialization in file sources by @mvdbeek in #16729
Exclude on_opened and on_closed from watcher events by @mvdbeek in #16850
Enhancements
Various Tool Shed Cleanup by @jmchilton in #15247
Protection against problematic boolean parameters. by @jmchilton in #15493
Explore tool remote test data by @davelopez in #15510
Update Python dependencies by @galaxybot in #15890
Record input datasets and collections at full parameter path by @mvdbeek in #15978
Code cleanups from ruff and pyupgrade by @nsoranzo in #16035
Vendorise packaging.versions.LegacyVersion by @nsoranzo in #16058
Improve histories and datasets immutability checks by @davelopez in #16143
23.0.6 (2023-10-23)
No recorded changes since last release
23.0.5 (2023-07-29)
No recorded changes since last release
23.0.4 (2023-06-30)
No recorded changes since last release
23.0.3 (2023-06-26)
No recorded changes since last release
23.0.2 (2023-06-13)
No recorded changes since last release
23.0.1 (2023-06-08)
Bug fixes
22.1.2 (2022-12-08)
Pin packaging dependency to < 22, fixes LegacyVersion import errors
Add missing pyparsing dependency
22.1.1 (2022-08-22)
First release from the 22.01 branch of Galaxy
21.1.0 (2021-03-19)
First release from the 21.01 branch of Galaxy.
20.9.1 (2020-10-28)
20.9.0 (2020-10-15)
First release from the 20.09 branch of Galaxy.
20.5.0 (2020-07-03)
First release from 20.05 branch of Galaxy.
19.9.0 (2019-11-21)
Initial import from dev branch of Galaxy during 19.09 development cycle.
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