Galaxy XML generation library
Project description
These libraries will support building of Tool XML and Tool Dependencies XML. We’d be happy to support any other XML that Galaxy supports, just make an issue or PR if you’re feeling motivated.
Known Bugs
no validation of unique names
repeats aren’t named properly
conditional/whens aren’t named properly
conditionals not handled in CLI
License
Apache License, v2
Changelog
0.5.2
Debugging Build
0.5.1
Debugging Build
0.5.0
Added support for toolprofile (@fubar2)
Removed default stdio addition (@fubar2)
Github Actions (@bernt-matthias)
0.4.14
Fix for TestRepeats (@fubar2)
0.4.13
Add TestOutputCollection, TestRepeat and tests (thanks @fubar2)
0.4.12
Correct the ordering of elements for planemo (thanks @fubar2)
Properly read stdio on loading tools (thanks @fubar2)
0.4.11
Update to command line override (thanks @fubar2)
0.4.10
Allow overriding of command line in support of positional args (thanks @fubar2)
0.4.9
Fix quoting of text params (thanks @fubar2!)
0.4.8
Fix travis deploy process
Fix testing
py36 only
0.4.6
Deprecate py2
Wrap version command in CDATA
0.4.5
Bug fixes:
Write catched error to logger instead of STDOUT
Fix Travis: install xmllint
Fix Travis: Deal with new flake8 restrictions for exceptions
0.4.3
Bug fixes:
Allow <discover_dataset> within <data> in <outputs>
Allow import of existing XML with no description
0.4.2
Add methods to check presence of EDAM and citations (thanks @khillion)
0.4.0
Add feature to import existing Galaxy xml
0.3.3
@khillion implemented the following:
<options> with <filter> and <column>
<container> for <requirements>
Started to add <tests> section
<section> in <inputs>
<collection> with <discover_datasets> in <outputs>
Please note that tool.parameters.OutputParam() has been changed to tool.parameters.OutputData()
0.3.2
configfiles (#8)
0.3.0
Travis auto-deploys on new tags
Testing
p3k
0.2.3
First widely used/stable version
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