get-some-ncbi-genomes

Installation

pip install get-some-ncbi-genomes

Usage

Download one or more NCBI genomes, given accession.

Build a CSV file containing download info:

get-some-ncbi-genomes GCA_002440745.1 --csv xyz.csv

Download the genome files directly:

get-some-ncbi-genomes --output-dir genomes/ --download-genomes GCA_002440745.1

Use the sourmash plugin to download genome files and make an info.csv:

sourmash scripts get-genomes GCA_002440745.1

Support

We suggest filing issues in the main sourmash issue tracker as that receives more attention!

Dev docs

get-some-ncbi-genomes is developed at https://github.com/ctb/get-some-ncbi-genomes/

Testing

Run:

pytest tests

Generating a release

Bump version number in pyproject.toml and push.

Make a new release on github.

Then pull, and:

python -m build

followed by twine upload dist/....