download one or more NCBI genomes by accession
Project description
get-some-ncbi-genomes
Installation
pip install get-some-ncbi-genomes
Usage
Download one or more NCBI genomes, given accession.
Build a CSV file containing download info:
get-some-ncbi-genomes GCA_002440745.1 --csv xyz.csv
Download the genome files directly:
get-some-ncbi-genomes --output-dir genomes/ --download-genomes GCA_002440745.1
Use the sourmash plugin to download genome files and make an info.csv:
sourmash scripts get-genomes GCA_002440745.1
Support
We suggest filing issues in the main sourmash issue tracker as that receives more attention!
Dev docs
get-some-ncbi-genomes
is developed at https://github.com/ctb/get-some-ncbi-genomes/
Testing
Run:
pytest tests
Generating a release
Bump version number in pyproject.toml
and push.
Make a new release on github.
Then pull, and:
python -m build
followed by twine upload dist/...
.
Project details
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