A jupyter content manager for Girder
Project description
The Jupyter Notebook web application provides a graphical interface for creating, opening, renaming, and deleting files in a virtual filesystem. girder_jupyter is a python package that implements a contents manager to allow Girder to become a backend for this virtual filesystem. This allows notebooks and files to be stored in a Girder server from within Jupyter.
Getting Started
Install the package in the Python environment you are running your Jupyter server in:
pip install girder-jupyterAdd the following options to your jupyter_notebook_config.py
c.NotebookApp.contents_manager_class = 'girder_jupyter.contents.manager.GirderContentsManager'
c.GirderContentsManager.api_key = '<api key>'
c.GirderContentsManager.api_url = '<api url>'Where <api key> is replaced with a Girder API key for the Girder server and <api url> is the URL to Girder instance you want
to use for example http://localhost:8080/api/v1.
Configuration Parameters
api_url- An API URL for the Girder server. Defaults to ‘http://localhost:8080/api/v1’api_key-A Girder API key key for the Girder server atapi_url. The key should have read and write permission scope.token- A Girder token for the Girder server atapi_url. This parameter is particularly useful when running instances from JupyterHub.root- The root in the Girder hierarchy to use as the content managers root. This path caninclude
{login}which will be replace with the current users login. Defaults to'user/{login}'
Note that either api_key or token must be provided for the contents manager to be able to
authenticate with the Girder server.
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