GO CAM Data Model (Python)
Project description
gocam
GO CAM Data Model (Python)
Website
https://geneontology.github.io/gocam-py
About
Example yaml/json
id: gomodel:568b0f9600000284
title: Antibacterial innate immune response in the intestine via MAPK cascade (C.
elegans)
taxon: NCBITaxon:6239
status: production
comments:
- 'Automated change 2023-03-16: RO:0002212 replaced by RO:0002630'
- 'Automated change 2023-03-16: RO:0002213 replaced by RO:0002629'
activities:
- id: gomodel:568b0f9600000284/57ec3a7e00000079
enabled_by: WB:WBGene00006575
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:15625192
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2019-09-23'
provenances: []
term: GO:0035591
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:15625192
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-06-28'
term: GO:0005737
part_of:
evidence:
- term: ECO:0000315
reference: PMID:19837372
with_objects:
- WB:WBVar00241222|WB:WBVar00241223
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2021-07-08'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:15123841
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-05-31'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/57ec3a7e00000109
- id: gomodel:568b0f9600000284/580685bd00000135
enabled_by: WB:WBGene00011979
molecular_function:
evidence:
- term: ECO:0000307
reference: GO_REF:0000015
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-11-12'
provenances: []
term: GO:0003674
occurs_in:
evidence:
- term: ECO:0000307
reference: GO_REF:0000015
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2021-11-29'
term: GO:0110165
part_of:
evidence:
- term: ECO:0000270
reference: PMID:17096597
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2021-07-08'
term: GO:0140367
- id: gomodel:568b0f9600000284/5745387b00000588
enabled_by: WB:WBGene00012019
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:17728253
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2019-09-23'
provenances: []
term: GO:0004674
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:17728253
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-01'
term: GO:0009898
part_of:
evidence:
- term: ECO:0000315
reference: PMID:19371715
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2016-10-19'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:19371715
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-02'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/5b528b1100002286
enabled_by: WB:WBGene00006599
molecular_function:
evidence:
- term: ECO:0000501
reference: GO_REF:0000037
with_objects:
- UniProtKB-KW:KW-0723
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-06'
- term: ECO:0000315
reference: PMID:23072806
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-06'
- term: ECO:0000501
reference: GO_REF:0000002
with_objects:
- InterPro:IPR000961
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-06'
- term: ECO:0000318
reference: PAINT_REF:24356
with_objects:
- PANTHER:PTN000683254
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-06'
provenances: []
term: GO:0004674
part_of:
evidence:
- term: ECO:0000315
reference: PMID:22470487
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-06'
term: GO:0002225
causal_associations:
- evidence:
- term: ECO:0000316
reference: PMID:19371715
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-01'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/5745387b00000588
- id: gomodel:568b0f9600000284/57ec3a7e00000119
enabled_by: WB:WBGene00004758
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:11751572
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2019-09-23'
provenances: []
term: GO:0004708
occurs_in:
evidence:
- term: ECO:0000318
reference: PMID:21873635
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-06-28'
term: GO:0005737
part_of:
evidence:
- term: ECO:0000315
reference: PMID:12142542
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:12142542
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-05-31'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/568b0f9600000285
enabled_by: WB:WBGene00004055
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
provenances: []
term: GO:0004707
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:20133945
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-01'
term: GO:0005829
part_of:
evidence:
- term: ECO:0000315
reference: PMID:12142542
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000314
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-05-31'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/568b0f9600000287
- id: gomodel:568b0f9600000284/57ec3a7e00000109
enabled_by: WB:WBGene00003822
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:11751572
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2019-09-23'
provenances: []
term: GO:0004709
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:15625192
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-06-28'
term: GO:0005737
part_of:
evidence:
- term: ECO:0000315
reference: PMID:12142542
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:12142542
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-05-31'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/57ec3a7e00000119
- id: gomodel:568b0f9600000284/5b91dbd100000652
enabled_by: WB:WBGene00006923
molecular_function:
evidence:
- term: ECO:0000314
reference: PMID:15116070
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
provenances: []
term: GO:0017017
occurs_in:
evidence:
- term: ECO:0000250
reference: PMID:15116070
with_objects:
- UniProt:Q920R2
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-01'
term: GO:0005737
part_of:
evidence:
- term: ECO:0000316
reference: PMID:22554143
with_objects:
- WB:WBGene00002187
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
- term: ECO:0000315
reference: PMID:22554143
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
term: GO:1900425
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:22554143
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-09'
predicate: RO:0002630
downstream_activity: gomodel:568b0f9600000284/5b91dbd100000659
- evidence:
- term: ECO:0000315
reference: PMID:15256594
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-06-20'
- term: ECO:0000315
reference: PMID:22554143
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
predicate: RO:0002630
downstream_activity: gomodel:568b0f9600000284/568b0f9600000285
- id: gomodel:568b0f9600000284/5b91dbd100000659
enabled_by: WB:WBGene00002187
molecular_function:
evidence:
- term: ECO:0000353
reference: PMID:12435362
with_objects:
- WB:WBGene00001599
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
- term: ECO:0000353
reference: PMID:12435362
with_objects:
- WB:WBGene00001600
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
- term: ECO:0000353
reference: PMID:23437011
with_objects:
- WB:WBGene00001345
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
- term: ECO:0000353
reference: PMID:23437011
with_objects:
- WB:WBGene00001345
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
provenances: []
term: GO:0005515
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:17699606
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2019-07-01'
term: GO:0005737
part_of:
evidence:
- term: ECO:0000315
reference: PMID:22554143
with_objects:
- WB:WBGene00002187
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-08'
term: GO:1900181
- id: gomodel:568b0f9600000284/568b0f9600000287
enabled_by: WB:WBGene00000223
molecular_function:
evidence:
- term: ECO:0000250
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-29'
provenances: []
term: GO:0000981
occurs_in:
evidence:
- term: ECO:0000314
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-29'
term: GO:0005634
part_of:
evidence:
- term: ECO:0000315
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-1706-4196
date: '2020-10-28'
term: GO:0140367
causal_associations:
- evidence:
- term: ECO:0000315
reference: PMID:20369020
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-09-26'
- term: ECO:0000315
reference: PMID:19837372
provenances:
- contributor: https://orcid.org/0000-0002-3013-9906
date: '2018-10-31'
predicate: RO:0002629
downstream_activity: gomodel:568b0f9600000284/580685bd00000135
objects:
- id: WB:WBGene00006599
label: tpa-1 Cele
- id: GO:0004674
label: protein serine/threonine kinase activity
- id: GO:0002225
label: positive regulation of antimicrobial peptide production
- id: ECO:0000501
label: evidence used in automatic assertion
- id: ECO:0000315
label: mutant phenotype evidence used in manual assertion
- id: ECO:0000318
label: biological aspect of ancestor evidence used in manual assertion
- id: WB:WBGene00006923
label: vhp-1 Cele
- id: GO:0017017
label: MAP kinase tyrosine/serine/threonine phosphatase activity
- id: GO:1900425
label: negative regulation of defense response to bacterium
- id: ECO:0000314
label: direct assay evidence used in manual assertion
- id: ECO:0000316
label: genetic interaction evidence used in manual assertion
- id: WB:WBGene00002187
label: kgb-1 Cele
- id: GO:0005515
label: protein binding
- id: GO:1900181
label: negative regulation of protein localization to nucleus
- id: ECO:0000353
label: physical interaction evidence used in manual assertion
- id: ECO:0000250
label: sequence similarity evidence used in manual assertion
- id: ECO:0000307
label: no evidence data found used in manual assertion
- id: GO:0005737
label: cytoplasm
- id: GO:0005829
label: cytosol
- id: GO:0009898
label: cytoplasmic side of plasma membrane
- id: WB:WBGene00000223
label: atf-7 Cele
- id: WB:WBGene00004055
label: pmk-1 Cele
- id: WB:WBGene00004758
label: sek-1 Cele
- id: GO:0004707
label: MAP kinase activity
- id: GO:0000981
label: DNA-binding transcription factor activity, RNA polymerase II-specific
- id: GO:0005634
label: nucleus
- id: GO:0016045
label: detection of bacterium
- id: GO:0003674
label: molecular_function
- id: GO:0035591
label: signaling adaptor activity
- id: WB:WBGene00006575
label: tir-1 Cele
- id: GO:0004709
label: MAP kinase kinase kinase activity
- id: WB:WBGene00003822
label: nsy-1 Cele
- id: GO:0004708
label: MAP kinase kinase activity
- id: WB:WBGene00012019
label: dkf-2 Cele
- id: GO:0140367
label: antibacterial innate immune response
- id: WB:WBGene00011979
label: sysm-1 Cele
- id: ECO:0000270
label: expression pattern evidence used in manual assertion
- id: GO:0110165
label: cellular anatomical entity
Project details
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