Collection of tools for Neuropixel 1.0 and 2.0 probes data

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Project links

Project description

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data (documentation coming soon...)

Installation

pip install ibl-neuropixel

Destriping

Getting started

This relies on a fast fourier transform external library: pip install pyfftw.

Minimal working example to destripe a neuropixel binary file.

from pathlib import Path
from ibldsp.voltage import decompress_destripe_cbin
sr_file = Path('/datadisk/Data/spike_sorting/pykilosort_tests/imec_385_100s.ap.bin')
out_file = Path('/datadisk/scratch/imec_385_100s.ap.bin')

decompress_destripe_cbin(sr_file=sr_file, output_file=out_file, nprocesses=8)

Viewer

The best way to look at the results is to use viewephys, open an ephys viewer on the raw data.

tick the destripe box.
move to a desired location in the file
ctr+P will make the gain and axis the same on both windows

alt text

You can then move within the raw data file.

White Paper

The following describes the methods implemented in this repository. https://doi.org/10.6084/m9.figshare.19705522

Contribution

Pypi Release checklist:

Edit the version number in setup.py, and add release notes in release_notes.md

flake8
tag=X.Y.Z
git tag -a $tag 
git push origin %tag

Create new release with tag X.Y.Z (will automatically publish to PyPI)

Project details

These details have not been verified by PyPI

Project links

Release history Release notifications | RSS feed

1.5.0

Oct 28, 2024

1.4.0

Oct 5, 2024

1.3.2

Sep 18, 2024

1.3.1

Sep 5, 2024

This version

1.3.0

Sep 5, 2024

1.2.1

Aug 21, 2024

1.2.0

Aug 1, 2024

1.1.3

Jul 11, 2024

1.1.2

Jul 3, 2024

1.1.1

Jul 2, 2024

1.0.1

May 29, 2024

1.0.0

Apr 24, 2024

0.10.3

Apr 18, 2024

0.10.2

Apr 10, 2024

0.10.1

Mar 19, 2024

0.10.0

Mar 14, 2024

0.9.2

Feb 8, 2024

0.9.1

Feb 8, 2024

0.9.0

Jan 17, 2024

0.8.1

Sep 21, 2023

0.8.0

Sep 1, 2023

0.7.0

Jul 21, 2023

0.6.2

Jun 19, 2023

0.6.1

Jun 6, 2023

0.5.3

Apr 24, 2023

0.5.2

Apr 19, 2023

0.5.1

Mar 7, 2023

0.5.0

Mar 6, 2023

0.4.1

Nov 29, 2022

0.4.0

Oct 28, 2022

0.3.1

Sep 5, 2022

0.3.0

Aug 22, 2022

0.2.2

Jun 29, 2022

0.2.1

Jun 28, 2022

0.2.0

Jun 27, 2022

0.1.0

May 5, 2022

0.0.1

Apr 18, 2022

0.0.0

Apr 18, 2022

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