Skip to main content

IBL atlas module

Project description

iblatlas

Tools to manipulate hierarchical 3D representations of the mouse brain anatomy for electrophysiolgy experiments. The tools are mainly using the the Allen CCF although some other atlases can be used.

This repository uses minimal requirements, based of standard matplotlib, numpy and scipy libraries, to the exclusion of more complex visualization tools such as pyqt.

Documentation

Full package documentation

Notebooks and examples

Installation

pip install iblatlas

Contributing

Changes are merged by pull requests. Release checklist:

  • Update version in iblatlas/__init__.py
  • Update CHANGELOG.md
  • Create a pull request to the main branch on GitHub
  • Once the PR is merged, create a new tag and push the tag

Once a tag is pushed on main the package is uploaded to PyPI using GitHub Actions.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

iblatlas-0.5.4.tar.gz (1.3 MB view details)

Uploaded Source

Built Distribution

iblatlas-0.5.4-py3-none-any.whl (174.5 kB view details)

Uploaded Python 3

File details

Details for the file iblatlas-0.5.4.tar.gz.

File metadata

  • Download URL: iblatlas-0.5.4.tar.gz
  • Upload date:
  • Size: 1.3 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.1 CPython/3.8.18

File hashes

Hashes for iblatlas-0.5.4.tar.gz
Algorithm Hash digest
SHA256 3bb6d50efa376e394b6d418498cf7c976440eb4706ff3949d1a48017ae786eeb
MD5 bb798fd18066aabce6d5a496d0a65a66
BLAKE2b-256 17a25d0ab4cfb211d57aaaacc626f918021b769f5963cfd253ecc95cd0f51a65

See more details on using hashes here.

File details

Details for the file iblatlas-0.5.4-py3-none-any.whl.

File metadata

  • Download URL: iblatlas-0.5.4-py3-none-any.whl
  • Upload date:
  • Size: 174.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.1 CPython/3.8.18

File hashes

Hashes for iblatlas-0.5.4-py3-none-any.whl
Algorithm Hash digest
SHA256 b83657d4b90124b0414d36b4bfa1ff856496f25dd5b9bef3980af311f59aacda
MD5 95ddb80921596fe841be76f8aa58ea13
BLAKE2b-256 26b28b1fe2d7b8b33267256eb2c6204824091a8d0c8c630fa12d7637c2b5e655

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page