IBL atlas module

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  • License: MIT License (MIT License Copyright (c) 2023 International Brain Laboratory Permission is hereby granted, free o...)
  • Author: IBL staff
  • Requires: Python >=3.8
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Project description

iblatlas

This repository contains tools to manipulate 3D representations of the mouse brain anatomy for electrophysiolgy experiments. The tools are mainly using the the Allen Brain Atlas although some other atlases can be used and are written in Python.

One of the requirment of this repository is to use minimal requirements, based of standard matplotlib, numpy and scipy libraries, and excludes visualisation tool.

The documentation can be found here: https://int-brain-lab.github.io/iblenv/notebooks_external/atlas_working_with_ibllib_atlas.html

Installation

pip install iblatlas

Contributing

Changes are merged by pull requests. Release checklist:

  • Update version in iblatlas/__init__.py
  • Update CHANGELOG.md
  • Create a pull request to the main branch on GitHub

Once merged the package is uploaded to PyPI using GitHub Actions.

Project details

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  • License: MIT License (MIT License Copyright (c) 2023 International Brain Laboratory Permission is hereby granted, free o...)
  • Author: IBL staff
  • Requires: Python >=3.8
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0.5.4

0.5.3

0.5.2

0.5.1

0.5.0

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0.3.0

0.2.1

0.2.0

0.1.1

0.1.0

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