imodmodel

IMOD model files as pandas dataframes in Python.

Installation

imodmodel can be installed from the Python Package Index (PyPI)

pip install imodmodel

We recommend installing into a clean virtual environment.

Usage

import imodmodel

df = imodmodel.read('my_model_file.mod')

In [3]: df.describe()
Out[3]: 
       object_id  contour_id           x           y       z
count       25.0   25.000000   25.000000   25.000000  25.000
mean         0.0    0.320000   65.413334   63.240001  73.280
std          0.0    0.476095   29.576687   28.116082   9.998
min          0.0    0.000000   10.666667    4.333333  59.000

That's it!