Submission scoring for the ISIC Challenge
Project description
ISIC: Skin Lesion Analysis Towards Melanoma Detection Scoring
Automated scoring code for the ISIC Challenge.
Installation
Python
Python version >= 3.7 is required.
pip install isic-challenge-scoring
Docker
docker pull isic/isic-challenge-scoring:latest
Usage
Python
Segmentation (Task 1)
isic-challenge-scoring segmentation /path/to/ISIC_GroundTruth/ /path/to/ISIC_predictions/
Classification (Task 3)
isic-challenge-scoring classification /path/to/ISIC_GroundTruth.csv /path/to/ISIC_prediction.csv
Docker
Since the application requires read access to files, Docker must mount them within the container; these examples use --mount to prevent nonexistent host paths from being accidentally created.
Segmentation (Task 1)
docker run \
--rm \
--mount type=bind,source="/path/to/ISIC_GroundTruth/",destination=/root/gt/,readonly \
--mount type=bind,source="/path/to/ISIC_predictions/",destination=/root/pred/,readonly \
isic/isic-challenge-scoring:latest \
segmentation \
/root/gt/ \
/root/pred/
Classification (Task 3)
docker run \
--rm \
--mount type=bind,source="/path/to/ISIC_GroundTruth.csv",destination=/root/gt.csv,readonly \
--mount type=bind,source="/path/to/ISIC_prediction.csv",destination=/root/pred.csv,readonly \
isic/isic-challenge-scoring:latest \
classification \
/root/gt.csv \
/root/pred.csv
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