Python wrapper to interface with ITk DB.
Project description
ITk DB v0.4.0rc12
To install as a user
pip install itkdb
or if you wish to develop/contribute
git clone ...
pip install -e .[develop]
or
git clone ...
pip install -e .[complete]
Using
Command line available via
itkdb --help
Environment Variables
See itkdb/settings/base.py for all environment
variables that can be set. All environment variables for this package are
prefixed with ITKDB_. As of now, there are:
ITKDB_ACCESS_CODE1: access code #1 for authenticationITKDB_ACCESS_CODE2: access code #2 for authenticationITKDB_ACCESS_SCOPE: scope for the access token authentication requestITKDB_AUTH_URL: authentication serverITKDB_SITE_URL: API serverITKDB_CASSETTE_LIBRARY_DIR: for tests, where to store recorded requests/responses
Develop
Bump Version
Run bump2version x.y.z to bump to the next version. We will always tag any
version we bump, and this creates the relevant commits/tags for you. All you
need to do is git push --tags and that should be it.
Examples
import itkdb
client = itkdb.Client()
comps = client.get(
"listComponents", json={"project": "P", "pageInfo": {"pageSize": 32}}
)
for i, comp in enumerate(comps):
print(i, comp["code"])
FAQ
SSL Error with CERN websites
If you run into SSL errors with CERN websites, you might need the CERN
certificate chain to sign the certificates correctly. Just add a verify
keyword into your calls:
client.get(..., verify=itkdb.data / "CERN_chain.pem")
and it should work.
pycurl error
If you try running itkdb and run into an issue like:
Traceback (most recent call last):
File "script.py", line 1, in <module>
import itkdb
File "/Users/kratsg/itkdb/src/itkdb/__init__.py", line 7, in <module>
from .client import Client
File "/Users/kratsg/itkdb/src/itkdb/client.py", line 8, in <module>
import pycurl
ImportError: pycurl: libcurl link-time ssl backends (secure-transport, openssl) do not include compile-time ssl backend (none/other)
You will need to reinstall pycurl and force re-compilation. This can be done by
first checking the config for curl on your machine:
$ curl-config --features
AsynchDNS
GSS-API
HTTPS-proxy
IPv6
Kerberos
Largefile
MultiSSL
NTLM
NTLM_WB
SPNEGO
SSL
UnixSockets
alt-svc
libz
and then setting the appropriate compile flags. For example, on a Mac, I have
openssl so I do the following:
on MacOS
$ brew info openssl
...
...
For compilers to find openssl@3 you may need to set:
export LDFLAGS="-L/usr/local/opt/openssl@3/lib"
export CPPFLAGS="-I/usr/local/opt/openssl@3/include"
...
which tells me to export the above lines and then I can reinstall correctly:
$ export LDFLAGS="-L/usr/local/opt/openssl@3/lib"
$ export CPPFLAGS="-I/usr/local/opt/openssl@3/include"
$ python -m pip install --no-cache-dir --compile --ignore-installed --install-option="--with-openssl" pycurl
on lxplus (CC7)
Assuming a virtual environment like
$ lsetup "views dev4 latest/x86_64-centos7-gcc11-opt"
$ python3 -m venv venv
$ source venv/bin/activate
I looked up the locations of the installations on lxplus for you already:
$ export LDFLAGS="-L/usr/local/lib/openssl"
$ export CPPFLAGS="-I/usr/local/include/openssl"
$ export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/usr/lib/pkgconfig/
$ python -m pip install --no-cache-dir --compile --ignore-installed --install-option="--with-nss" pycurl
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