Jupyter widgets to visualize images in 2D and 3D
Project description
Interactive Jupyter widgets to visualize images in 2D and 3D.
These widgets are designed to support image analysis with the Insight Toolkit (ITK), but they also work with other spatial analysis tools in the scientific Python ecosystem.
These widgets are built on itk.js and vtk.js.
Installation
To install, use pip:
pip install itkwidgets jupyter nbextension install --py --sys-prefix itkwidgets jupyter nbextension enable --py --sys-prefix itkwidgets
Examples
After installation, try the following examples that demonstrate how to visualize:
ImageJ ImgLib2 images (requires conda and a local Fiji installation)
NumPy array images (processed with SciPy)
Hacking
For a development installation (requires Node.js):
git clone https://github.com/InsightSoftwareConsortium/itk-jupyter-widgets.git cd itk-jupyter-widgets python -m pip install -r requirements-dev.txt -r requirements.txt python -m pip install -e . jupyter nbextension install --py --symlink --sys-prefix itkwidgets jupyter nbextension enable --py --sys-prefix itkwidgets jupyter nbextension enable --py --sys-prefix widgetsnbextension python -m pytest
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