khmer

khmer k-mer counting library

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Maintainers

Project description

Supported Python versions

khmer

Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!

The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.

Getting help

See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:

first point of contact when looking for help: https://github.com/dib-lab/khmer/issues
mailing list for discussion: http://lists.idyll.org/listinfo/khmer
mailing list for announcements: http://lists.idyll.org/listinfo/khmer-announce
email contact for project maintainers: khmer-project@idyll.org

Important note: cite us!

khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.

The khmer library is a project of the Lab for Data Intensive Biology at UC Davis, and includes contributions from its members, collaborators, and friends.

Quick install

pip install khmer
pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'

See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.

Contributing

We welcome contributions to khmer from the community! If you’re interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.

Project details

These details have been verified by PyPI

Maintainers

betatim daniel.standage luizirber titus

Release history Release notifications | RSS feed

This version

2.1.1

May 26, 2017

2.1

May 22, 2017

2.1rc3 pre-release

May 22, 2017

2.0

Sep 8, 2015

1.4.1

May 28, 2015

1.4

May 13, 2015

1.3

Jan 8, 2015

1.2

Dec 8, 2014

1.1

Jun 17, 2014

1.0.1

May 9, 2014

1.0

Apr 1, 2014

0.8

Feb 27, 2014

0.7.1

Nov 19, 2013

0.7

Nov 18, 2013

0.6.1

Oct 15, 2013

0.6

Oct 7, 2013

0.4

Sep 10, 2013

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