khmer k-mer counting library
Project description
khmer
Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!
The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.
Getting help
See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:
first point of contact when looking for help: https://github.com/dib-lab/khmer/issues
mailing list for discussion: http://lists.idyll.org/listinfo/khmer
mailing list for announcements: http://lists.idyll.org/listinfo/khmer-announce
email contact for project maintainers: khmer-project@idyll.org
Important note: cite us!
khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.
The khmer library is a project of the Lab for Data Intensive Biology at UC Davis, and includes contributions from its members, collaborators, and friends.
Quick install
pip install khmer pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'
See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.
Contributing
We welcome contributions to khmer from the community! If you’re interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Hashes for khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 6b5548c457aa506bc43962c36d4fa2ffcd5a0762b862d18e915041e3adba8737 |
|
| MD5 | 85dc332f1d7099d3e82e94d568ba7aba |
|
| BLAKE2b-256 | 3f1e931281ac388cbb15d40319d0dcd54cfc3f1d972da5de2fa3063facedc966 |
Hashes for khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 06a1e981744c3aea2e74fdc668914afb13e36bce96f12777852fa9b9b14d9658 |
|
| MD5 | 9a7a1034dd0b80e328a2f70d80778e67 |
|
| BLAKE2b-256 | 5f7add356f3b267d2adf079deebdd94590e42edbc376a2058759ff78ee6a75c5 |
Hashes for khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | deef940b791731d1af110cc1973c4ee5f437701181fc16537b468f857a62a2fa |
|
| MD5 | 14aa7367c91824ba921a3d1a03d391ee |
|
| BLAKE2b-256 | 34a5f3815d5ec3ee20f884f140ae4a2f253ae6d59885684fa8adc5525a9ed4f4 |
Hashes for khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 10d448f3131303c5c4745aecad7473f6e35ac5737d6fa2a7b731aedeea874e77 |
|
| MD5 | c64d81a8b7d79061ee93419b064e6f42 |
|
| BLAKE2b-256 | 405a328d310361d98bb2f29361128eaa2493f44b51997d6837c72f1766c4ec7b |
Hashes for khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 4a62de0eaafc3dbf4ea01006504a3e98853f4a0b8b37e72c9e93082181f0f2c5 |
|
| MD5 | 6acdffe8ffcc55e71d7d8d0a2cc8dc7c |
|
| BLAKE2b-256 | d355d3f5da570677903679e0c40aa4b93323853ebe15e75944b4a0d7d25d11c8 |
