kyu's utils
Project description
kyutils
kyu's utils
examples
- behavior
- given the extracted DIO dat files from a SpikeGadgets
rec
file, plots the time course of the animal's decisions in the W-track task and indicates rewarded trials - plots place field
- given the extracted DIO dat files from a SpikeGadgets
- nwb
- basic NWB conversion of ephys data
- probe
probeinterface.Probe
objects for the 15um and 20um versions of the Livermore polymer probes
- spikegadgets
- generates a trodesconf file based on a list of Livermore probe types; e.g. if implanting three Livermore probes (one 15um type and two 20um type) in alternating order, can pass the list
[20, 15, 20]
and will generate a trodesconf file with the contacts arranged geometrically - generate a trodesconf file given the number of channels; good for reconfiguring
- parses the header of a SpikeGadgets
rec
file
- generates a trodesconf file based on a list of Livermore probe types; e.g. if implanting three Livermore probes (one 15um type and two 20um type) in alternating order, can pass the list
- spikesorting
- plots spike waveform in probe geometry
- computes standard metrisc for frank lab
- generates figurl
installation
pip install kyutils
for the version that creates figurls, do pip install "kyutils[figurl]"
and set up kachery-cloud
.
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