LaminDB: Manage R&D data & analyses.
Project description
LaminDB: Manage R&D data & analyses
Curate, store, track, query, integrate, and learn from biological data.
LaminDB is an open-source data lake for R&D in biology.
It gives you components to build on data lineage & biological entities with an ORM for your existing infrastructure: object storage (local directories, S3, GCP) with a mapped SQL query engine (SQLite, Postgres, and soon, BigQuery).
You can readily create distributed LaminDB instances at any scale:
- Get started on your laptop, deploy in the cloud, or work with a mesh of instances for different teams and purposes.
- Share them through a hub akin to HuggingFace & GitHub - see, e.g, lamin.ai/sunnyosun.
Public beta: Currently only recommended for collaborators as we still make breaking changes.
Installation
LaminDB is a python package available for Python versions 3.8+.
pip install lamindb
Biological entities are installed like so:
pip install 'lamindb[bionty,lamin1]'
Import
In your python script, import LaminDB as:
import lamindb as ln
Quick setup
Quick setup on the command line:
- Sign up via
lamin signup <email> - Log in via
lamin login <handle> - Set up an instance via
lamin init --storage <storage> --schema <schema_modules>
Documentation
Read the docs.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file lamindb-0.39rc1.tar.gz.
File metadata
- Download URL: lamindb-0.39rc1.tar.gz
- Upload date:
- Size: 156.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: python-requests/2.28.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 27f65655952f0f4a0fcd42717c252ceb9c3d2d99cba2ceaab190669597de23a6 |
|
| MD5 | b9d8c2abcf8c896bcde9b2eede8c8948 |
|
| BLAKE2b-256 | 5f2a4016fc4d0f9a6074281a8dbec4d483bbafe8f01b7dbc739d6579919f232b |
Provenance
File details
Details for the file lamindb-0.39rc1-py3-none-any.whl.
File metadata
- Download URL: lamindb-0.39rc1-py3-none-any.whl
- Upload date:
- Size: 39.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: python-requests/2.28.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 1e8c56adfa6e7adfe871317d2804b08f007b0a8faa90429534696342b7fa5cbc |
|
| MD5 | 9eed7e37e4939028f7ee231e54e2d3bd |
|
| BLAKE2b-256 | a2329e277bb8d57b78de1170286465d9fc224a351b415307924861335b11445c |
