MITOS
Project description
This is the README file for the mitogenome related sources including MITOS and other (more or less) helpful tools. Note that some of the tools are unfinished and not in a production state.
Clearly this README is a stub. We are happy to extend the documentation on request. So just send a message if you need further information.
Installation
There are several ways to install. Prefered is the installation via conda since this also takes care of non-python requirements of the main mitos script.
via conda: TODO
via pip: pip install mitos
pip -r requirements.txt
For the non-python requirements see README.MITOS.
MITOS
- mitos.py
standalone version
see also mitos.py –help README.MITOS
genbank file handling
- refseqsplit:
splits a file consisting of concatenated gb files into single genbank files
its possible to apply filters (taxonomy, prefix)
MISC
- gcpp
pretty print and compare genetic code
Database handling
- db2bed:
tool to write Features from the Db in a bed file
- dbgetacc:
print all accesions that in the Db
- db2mitos:
tool to merge Features from the Db like Mitos and write in a bed file
- db2fasta:
tool to write fasta with subsequences of genom from features in db.
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