Simple implementation of Most Permissive Boolean networks
Project description
The mpbn Python module offers a simple implementation of reachability and attractor analysis in Most Permissive Boolean Networks (doi:10.1038/s41467-020-18112-5).
It is built on the minibn module from colomoto-jupyter which allows importation of Boolean networks in many formats. See http://colomoto.org/notebook.
Installation
CoLoMoTo Notebook environment
mpbn is distributed in the CoLoMoTo docker.
Using pip
pip install mpbn
Using conda
conda install -c colomoto -c potassco mpbn
Documentation
Documentation is available at https://mpbn.readthedocs.io.
Example notebooks:
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mpbn-1.6.tar.gz
(6.7 kB
view details)
Built Distribution
mpbn-1.6-py3-none-any.whl
(7.1 kB
view details)
File details
Details for the file mpbn-1.6.tar.gz.
File metadata
- Download URL: mpbn-1.6.tar.gz
- Upload date:
- Size: 6.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 94852240b5c82aaea9d256b251ed2b76e66d0d2798cc54c3b9ad655d71efa5a3 |
|
| MD5 | 37e51c8b5b90d96b8d068b1a5edebeb0 |
|
| BLAKE2b-256 | f84a537d42dc5077dd2cc1c0645a1834b744128f96e4ea8ef7b61847583f994d |
File details
Details for the file mpbn-1.6-py3-none-any.whl.
File metadata
- Download URL: mpbn-1.6-py3-none-any.whl
- Upload date:
- Size: 7.1 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | dd3f5e49b08e2c13857e7a8ba10e1ff4fb0bcd148c0429b85d8892ed99802d6d |
|
| MD5 | e7a90dce859b66027eafd8217aa8b89e |
|
| BLAKE2b-256 | 9e97400bfce7bd54eab603e53cbd69ce365e3fc445a192f8287da7482b663ff1 |
