Create aggregate bioinformatics analysis report across many samples
Project description
MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a number of common tools (FastQC, Bowtie, Picard and many others).
You can install MultiQC from PyPI as follows:
pip install multiqc
Then it’s just a case of going to your analysis directory and running the script:
multiqc .
MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.
The report is created in multiqc_report/multiqc_report.html by default. A zip file of the report is also generated to facilitate easy transfer and sharing.
Tab-delimited data files are created in multiqc_report/report_data/ to give easy access for downstream processing.
For more detailed instructions, run multiqc -h
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file multiqc-0.2.0.tar.gz.
File metadata
- Download URL: multiqc-0.2.0.tar.gz
- Upload date:
- Size: 835.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 60e2837379a97ea0d6d1a66d825b48abf36a4a4fa270c76b4b76773d16002b36 |
|
| MD5 | 081479604dd7222eb34a5ff9adde7fe1 |
|
| BLAKE2b-256 | e97c14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0 |
