Create aggregate bioinformatics analysis report across many samples
Project description
MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a number of common tools (FastQC, Bowtie, Picard and many others).
You can install MultiQC from PyPI as follows:
pip install multiqc
Then it’s just a case of going to your analysis directory and running the script:
multiqc .
MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.
The report is created in multiqc_report.html by default. Tab-delimited data files are created in multiqc_data/ to give easy access for downstream processing.
For more detailed instructions, run multiqc -h or see the MultiQC website at http://multiqc.info
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