multiqc

Create aggregate bioinformatics analysis reports across many samples and tools

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Project description

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a large number of common bioinformatics tools.

You can install MultiQC from PyPI as follows:

pip install multiqc

Then it’s just a case of going to your analysis directory and running the script:

multiqc .

MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.

The report is created in multiqc_report.html by default. Tab-delimited data files are created in multiqc_data/ to give easy access for downstream processing.

For more detailed instructions, run multiqc -h

See the MultiQC website for documentation and tutorial videos: http://multiqc.info

MultiQC was written by Phil Ewels (http://phil.ewels.co.uk) at SciLifeLab Sweden (http://www.scilifelab.se)

Project details

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Release history Release notifications | RSS feed

1.25.2

Nov 20, 2024

1.25.1

Oct 1, 2024

1.25

Sep 17, 2024

1.24.1

Aug 21, 2024

1.24

Aug 19, 2024

1.23

Jul 9, 2024

1.22.3

Jun 22, 2024

1.22.2

May 31, 2024

1.22.1

May 17, 2024

1.22

May 15, 2024

1.21

Feb 28, 2024

1.20

Feb 12, 2024

1.19

Dec 18, 2023

1.18

Nov 17, 2023

1.17

Oct 17, 2023

1.16

Sep 22, 2023

1.15

Aug 4, 2023

1.14

Jan 8, 2023

1.13

Sep 8, 2022

1.12

Feb 8, 2022

1.11

Jul 5, 2021

1.10.1

Mar 31, 2021

This version

1.10

Mar 8, 2021

1.9

May 30, 2020

1.8

Nov 20, 2019

1.7

Dec 21, 2018

1.6

Aug 4, 2018

1.5

Mar 15, 2018

1.4

Jan 11, 2018

1.3

Nov 3, 2017

1.2

Aug 16, 2017

1.1

Jul 18, 2017

1.0

May 17, 2017

0.9

Dec 21, 2016

0.8

Sep 26, 2016

0.7

Jul 4, 2016

0.6

Apr 29, 2016

0.5

Mar 29, 2016

0.4

Feb 16, 2016

0.3.2

Feb 8, 2016

0.3.1

Nov 4, 2015

0.3.0

Nov 4, 2015

0.2.0

Sep 18, 2015

0.1

Sep 1, 2015

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