Create aggregate bioinformatics analysis reports across many samples and tools

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ewels from gravatar.com ewels

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 (GPLv3) (GPLv3)
  • Author: Phil Ewels
  • Tags bioinformatics, biology, sequencing, NGS, next generation sequencing, quality control
Classifiers

Project description

MultiQC is a tool to aggregate bioinformatics results across many samples into a single report. It is written in Python and contains modules for a large number of common bioinformatics tools.

You can install MultiQC from PyPI as follows:

pip install multiqc

Then it’s just a case of going to your analysis directory and running the script:

multiqc .

MultiQC will scan the specified directory ('.' is the current dir) and produce a report detailing whatever it finds.

The report is created in multiqc_report.html by default. Tab-delimited data files are created in multiqc_data/ to give easy access for downstream processing.

For more detailed instructions, run multiqc -h

See the MultiQC website for documentation and tutorial videos: http://multiqc.info

MultiQC was written by Phil Ewels (http://phil.ewels.co.uk) at Seqera Labs (https://seqera.io/), originally at SciLifeLab Sweden (http://www.scilifelab.se)

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ewels from gravatar.com ewels

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 (GPLv3) (GPLv3)
  • Author: Phil Ewels
  • Tags bioinformatics, biology, sequencing, NGS, next generation sequencing, quality control
Classifiers

Release history Release notifications | RSS feed

1.25.2

1.25.1

1.25

1.24.1

1.24

1.23

1.22.3

1.22.2

1.22.1

1.22

1.21

1.20

1.19

1.18

1.17

1.16

1.15

This version

1.14

1.13

1.12

1.11

1.10.1

1.10

1.9

1.8

1.7

1.6

1.5

1.4

1.3

1.2

1.1

1.0

0.9

0.8

0.7

0.6

0.5

0.4

0.3.2

0.3.1

0.3.0

0.2.0

0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

multiqc-1.14.tar.gz (1.1 MB view details)

Uploaded Source

Built Distribution

multiqc-1.14-py3-none-any.whl (1.3 MB view details)

Uploaded Python 3

File details

Details for the file multiqc-1.14.tar.gz.

File metadata

  • Download URL: multiqc-1.14.tar.gz
  • Upload date:
  • Size: 1.1 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.1 CPython/3.11.1

File hashes

Hashes for multiqc-1.14.tar.gz
Algorithm Hash digest
SHA256 dcbba405f0c9521ed2bbd7e8f7a9200643047311c9619878b81d167300149362
MD5 872fb878ec01b623a1574a13d6058492
BLAKE2b-256 aebb3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb

See more details on using hashes here.

File details

Details for the file multiqc-1.14-py3-none-any.whl.

File metadata

  • Download URL: multiqc-1.14-py3-none-any.whl
  • Upload date:
  • Size: 1.3 MB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.1 CPython/3.11.1

File hashes

Hashes for multiqc-1.14-py3-none-any.whl
Algorithm Hash digest
SHA256 077a8854a7c906383e10dedd6f14feb6cc949b96a94dbe18a4114b65d92bbbf7
MD5 bf1027a057ea359b6be6e782d83e247a
BLAKE2b-256 114c0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page