Bioformats for napari, using pims
Project description
napari-bioformats
Bioformats plugin for napari using pims-bioformats
Installation
The easiest way to install napari-bioformats is via conda, from the
conda-forge channel:
conda install -c conda-forge napari-bioformats
It is also possible to install via pip, but you will need to have a working
JVM installed, and may need to set the JAVA_HOME environment variable
pip install napari-bioformats
First Usage
The first time you attempt to open a file with napari-bioformats, you will
likely notice a long delay as pims downloads the loci_tools.jar (speed will
depend on your internet connection). Subsequent files should open more quickly.
License
Distributed under the terms of the BSD-3 license, "napari-bioformats" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.
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Source Distribution
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