Interactive visualization of spatial omics data with napari
Project description
napari-spatialdata: interactive exploration and annotation of spatial omics data
This repository contains a napari plugin for interactively exploring and annotating SpatialData objects. napari-spatialdata is part of the SpatialData ecosystem. To learn more about SpatialData, please see the documentation.
Installation
You can install napari-spatialdata via pip:
pip install napari-spatialdata
Development Version
You can install napari-spatialdata from Github with:
pip install git+https://github.com/scverse/napari-spatialdata
Or, you can also install in editable mode after cloning the repo by:
git clone https://github.com/scverse/napari-spatialdata
cd napari-spatialdata
pip install -e .
Getting started
To learn how to use the napari-spatialdata plugin, please see the documentation. To learn how to integrate napari-spatialdata into your analysis workflows, please see the SpatialData tutorials. In particular:
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-spatialdata" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
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