napari-tyssue

A napari plugin for use with the tyssue library

Example video of apoptosis demo simulation created based on the apoptosis demo from tyssue-demo.

Example video of apoptosis demo simulation created based on work under revision by Suzanne group at U Toulouse entitled "Epithelio-mesenchymal transition generates an apico-basal driving force required for tissue remodeling" available here.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You are better off using conda. You will need pytables, and ideally CGAL.

You can install napari-tyssue via pip:

pip install napari-tyssue

To install latest development version :

pip install git+https://github.com/kephale/napari-tyssue.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-tyssue" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.