NovelaNeurotechnologies Namespaces
Project description
ndx-franklab-novela Extension for NWB
About
ndx-franklab-novela is a python package containing NWB custom extensions for Loren Frank's Lab.
How to install
Add ndx-franklab-novela to your conda environment
pip install git+git://github.com/LorenFrankLab/ndx-franklab-novela
The original published extension maintained by NovelaNeuro can be installed using:
conda install -c conda-forge -c novelakrk ndx-franklab-novela
How to install
Add ndx-franklab-novela to your conda environment
pip install git+git://github.com/LorenFrankLab/ndx-franklab-novela
The original published extension maintained by NovelaNeuro can be installed using:
conda install -c conda-forge -c novelakrk ndx-franklab-novela
Extensions
AssociatedFiles
Representation of associated files in NWB.
Attributes:
- description
string
: description of associated file - content
string
: content of associated file - task_epochs
string
: id of epochs with task that is descripted by associated files
HeaderDevice
Representation of HeaderDevice in NWB.
Attributes:
- headstage_serial
string
: headstage_serial from header global configuration - headstage_smart_ref_on
string
: headstage_smart_ref_on from header global configuration - realtime_mode
string
: realtime_mode from header global configuration - headstage_auto_settle_on
string
: headstage_auto_settle_on from header global configuration - timestamp_at_creation
string
: timestamp_at_creation from header global configuration - controller_firmware_version
string
: conntroller_firmware_version from header global configuration - controller_serial
string
: conntroller_serial from header global configuration - save_displayed_chan_only
string
: save_displayed_chan_only from header global configuration - headstage_firmware_version
string
: headstage_firmware_version from header global configuration - qt_version
string
: qt_version from header global configuration - compile_date
string
: compile_date from header global configuration - compile_time
string
: compile_time from header global configuration - file_prefix
string
: file_prefix from header global configuration - headstage_gyro_sensor_on
string
: headstage_gyro_sensor_on from header global configuration - headstage_mag_sensor_on
string
: headstage_mag_sensor_on from header global configuration - trodes_version
string
: trodes_version from header global configuration - headstage_accel_sensor_on
string
: headstage_accel_sensor_on from header global configuration - commit_head
string
: commit_head from header global configuration - system_time_at_creation
string
: system_time_at_creation from header global configuration - file_path
string
: file_path from header global configuration
ShanksElectrode
Representation of electrodes of a shank in NWB.
Attributes:
- name
string
: name of the shank - rel_x
float
: the rel_x value of this electrode - rel_y
float
: the rel_y value of this electrode - rel_z
float
: the rel_z value of this electrode
Shank
Representation of a shank in NWB.
Attributes:
- name
string
: name of the shank - shanks_electrodes
dict
: electrodes in the shank
Probe
Representation of a probe in NWB.
Attributes:
- id
int
: unique id of the probe - probe_type
string
: type of probe - units
string
: units in device - probe_description
string
: description of probe - contact_side_numbering
bool
: is contact_side_numbering enabled - contact_size
float
: value of contact size as float - shanks
dict
: shanks in the probe
DataAcqDevice
Representation of data acquisition device in NWB.
Attributes:
- system
string
: system of device - amplifier
string
: amplifier (optional) - adc_circuit
string
: adc_circuit (optional)
CameraDevice
Representation of a camera device in NWB.
Attributes:
- meters_per_pixel
float
: meters per pixel - model
string
: model of this camera device - lens
string
: info about lens in this camera - camera_name
string
: name of this camera
This extension was created using ndx-template.
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