LabMetaData extension.
Project description
ndx-labmetadata-abf extension for NWB:N
Extension of the lab_meta_data field.
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Python Installation
pip install git+https://github.com/ben-dichter-consulting/ndx-labmetadata-abf.git
Python Usage
from datetime import datetime
from pynwb import NWBFile, NWBHDF5IO
from ndx_labmetadata_abf import LabMetaData_ext
nwb = NWBFile('session_description', 'identifier', datetime.now().astimezone())
# Creates LabMetaData container
lab_metadata = LabMetaData_ext(
name='LabMetaData',
cell_id='cell_id',
tissue_sample_id='tissue_sample_id',
)
# Add to file
nwb.add_lab_meta_data(lab_metadata)
# Write nwb file
with NWBHDF5IO('test_labmetadata.nwb', 'w') as io:
io.write(nwb)
# Read nwb file and check its content
with NWBHDF5IO('test_labmetadata.nwb', 'r', load_namespaces=True) as io:
nwb = io.read()
print(nwb.lab_meta_data['LabMetaData'])
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