Python NGS tools
Project description
Create new version:
` bumpversion patch python setup.py sdist upload -r pypi `
Create chromInfo.txt:
` GENOME_NAME=GCA_000001405.15_GRCh38_genomic; mkdir negspy/data/${GENOME_NAME}; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt; git add negspy/data/${GENOME_NAME}/chromInfo.txt; GENOME_NAME=GCA_000001215.4_Release_6_plus_ISO1_MT_genomic; mkdir negspy/data/${GENOME_NAME}; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt; git add negspy/data/${GENOME_NAME}/chromInfo.txt; GENOME_NAME=GCF_000005845.2_ASM584v2_genomic; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt `
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