negspy

Python NGS tools

Project description

Create new version:

` bumpversion patch python setup.py sdist upload -r pypi `

Create chromInfo.txt:

` GENOME_NAME=GCA_000001405.15_GRCh38_genomic; mkdir negspy/data/${GENOME_NAME}; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt; git add negspy/data/${GENOME_NAME}/chromInfo.txt; GENOME_NAME=GCA_000001215.4_Release_6_plus_ISO1_MT_genomic; mkdir negspy/data/${GENOME_NAME}; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt; git add negspy/data/${GENOME_NAME}/chromInfo.txt; GENOME_NAME=GCF_000005845.2_ASM584v2_genomic; zcat ~/data/genomes/${GENOME_NAME}.fna.gz | python scripts/create_chrominfo.py - > negspy/data/${GENOME_NAME}/chromInfo.txt `

Project details

Release history Release notifications | RSS feed

0.2.24

Jan 4, 2020

0.2.23

Aug 25, 2019

0.2.22

May 20, 2019

0.2.21

May 18, 2019

0.2.20

Nov 13, 2017

0.2.19

Sep 13, 2017

0.2.18

Aug 10, 2017

0.2.17

Jul 31, 2017

0.2.16

Jul 30, 2017

0.2.15

Jul 17, 2017

0.2.14

Jul 14, 2017

0.2.13

Jul 14, 2017

0.2.12

Jul 13, 2017

0.2.11

Jul 13, 2017

0.2.10

Jul 13, 2017

0.2.9

Jul 11, 2017

0.2.8

Jul 4, 2017

This version

0.2.5

May 1, 2017

0.2.4

Apr 13, 2017

0.2.3

Apr 13, 2017

0.2.2

Mar 22, 2017

0.2.1

Jan 20, 2017

0.2.0

Jan 17, 2017

0.1.6

Dec 7, 2016

0.1.5

Nov 10, 2016

0.1.4

Sep 15, 2016

0.1.3

Sep 14, 2016

0.1.2

Sep 14, 2016

0.1.1

Sep 14, 2016

0.1

Sep 1, 2016

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