Mechanistic pathway knowledge on Epilepsy encoded in Biological Expression Language
Project description
Mechanistic pathway knowledge on Epilepsy encoded in Biological Expression Language.
Installation
To install the neurommsig_epilepsy python package for programmatic access to the BEL files in this repository, use the following code in your shell:
$ pip install neurommsig_epilepsy
To install the neurommsig_epilepsy python package for programmatic access to the BEL files in this repository, use the following code in your shell:
$ git clone https://github.com/neurommsig-epilepsy/neurommsig-epilepsy.git
$ cd neurommsig_epilepsy
$ pip install -e .
To optionally re-compile all of the BEL files, use
$ neurommsig-epilepsy compile
Usage
To get the knowledge and summarize it, use:
import neurommsig_epilepsy
graph = neurommsig_epilepsy.get_graph()
graph.summarize()
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