NiPreps implementation of FreeSurfer's SynthStrip
Project description
SynthStrip
This is a NiPreps implementation of the SynthStrip skull-stripping tool.
Installation
# To install the base package
pip install nipreps-synthstrip
# For the nipype interface
pip install nipreps-synthstrip[nipype]
# For the pydra interface
pip install nipreps-synthstrip[pydra]
Command Line Tool
$ nipreps-synthstrip
Nipype Interface
from nipreps.synthstrip.wrappers.nipype import SynthStrip
Pydra Interface
from nipreps.synthstrip.wrappers.pydra import SynthStrip
Citation
A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. SynthStrip: Skull-Stripping for Any Brain Image. https://arxiv.org/abs/2203.09974
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