Convert data to nwb
Project description
NWB conversion tools
NWB Conversion Tools is a package for creating NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
Under heavy construction. API is changing rapidly.
Features:
- Command line interface
- Python API
- Leverages SpikeExtractor to support conversion from a number or proprietary formats.
Installation
To install nwb-conversion-tools directly in an existing environment:
$ pip install nwb-conversion-tools
Alternatively, to clone the repository and set up a conda environment, do:
$ git clone https://github.com/catalystneuro/nwb-conversion-tools
$ cd nwb-conversion-tools
$ conda env create -f make_env.yml
$ conda activate nwb_conversion_env
$ pip install .
Dependencies
NWB Conversion Tools relies heavily on SpikeExtractors for electrophysiology and on ROIExtractors for optophysiology data.
You can use a graphical interface for your converter with NWB Web GUI.
Rebuilding on Read the Docs
As a maintainer, once the changes to the documentation are on the master branch, go to https://readthedocs.org/projects/nwb-conversion-tools/ and click "Build version". Check the console output and its log for any errors.
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