oakx-oger
Project description
oakx-oger
This is an OGER plugin for oaklib
.
ALPHA
Usage
pip install oakx-oger
runoak -i oger:sqlite:obo:envo annotate cultured organisms polar ecosystems atmospheric gas exchange
How it works
There are two possible inputs to this plugin:
- A
.txt
file [runoak -i oger:sqlite:obo:envo annotate --text-file text.txt
] - Words that need to be annotated.[
runoak -i oger:sqlite:obo:envo annotate cultured organisms polar ecosystems atmospheric gas exchange
]
Input ontologies generally used oaklib
can be used with an oger:
prefix.
Note: This has been tested only with oger:sqlite:obo:*
for now.
Acknowledgements
This cookiecutter project was developed from the oakx-plugin-cookiecutter template and will be kept up-to-date using cruft.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
oakx_oger-0.1.5.tar.gz
(9.4 kB
view hashes)
Built Distribution
oakx_oger-0.1.5-py3-none-any.whl
(10.1 kB
view hashes)
Close
Hashes for oakx_oger-0.1.5-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 72b5516443d0cbda019881983432bfc5e87de344b4dca041f7dc150d68ca80ef |
|
MD5 | d83fcedff138c4be44d6dc8af8c3826f |
|
BLAKE2b-256 | 9b948a60eae58e00896bb1fc229fddd25303ec43a2278c3f29483741407f48e9 |