A Python plugin for OMERO.web
Project description
OMERO.iviewer
An OMERO.web app for visualizing images in OMERO.
Requirements
OMERO 5.6.0 or newer.
Installing from PyPI
This section assumes that an OMERO.web is already installed.
Install the app using pip:
NB: You need to ensure that you are running pip from the python environment where omero-web is installed. Depending on your install, you may need to call pip with, for example: /path/to/venv/bin/pip install ...
$ pip install -U omero-iviewer
Add iviewer custom app to your installed web apps:
$ omero config append omero.web.apps '"omero_iviewer"'
To replace the default omero.web viewer:
$ omero config set omero.web.viewer.view omero_iviewer.views.index
To enable the “open with” feature:
$ omero config append omero.web.open_with '["omero_iviewer", "omero_iviewer_index",
{"supported_objects":["images", "dataset", "well"],
"script_url": "omero_iviewer/openwith.js", "label": "OMERO.iviewer"}]'
Now restart OMERO.web as normal.
Usage
A guide to using OMERO.iviewer can be found on https://omero-guides.readthedocs.io/en/latest/iviewer/docs/iviewer.html
License
OMERO.iviewer is released under the AGPL.
Copyright
2017-2022, The Open Microscopy Environment
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