Python bindings to the OMERO.blitz server
Project description
Introduction
OMERO.py provides Python bindings to the OMERO.blitz server as well as a pluggable command-line interface.
Dependencies
Direct dependencies of OMERO.py are:
Installation
See: OMERO documentation
Usage
See: OMERO documentation
Contributing
See: OMERO documentation
Developer installation
OMERO.py currently depends on an externally built artifact which is automatically bundled in the PyPI package.
For a development installation we recommend creating a virtualenv with the following setup (example assumes python3.6 but you can create and activate the virtualenv using any compatible Python):
python3.6 -mvenv venv . venv/bin/activate pip install zeroc-ice==3.6.5 git clone https://github.com/ome/omero-py cd omero-py python setup.py devtarget pip install -e .
This will install OMERO.py into your virtualenv as an editable package, so any edits to src files should be reflected in your installation. Note that if you add or remove files you must rerun the last two steps.
Running tests
Unit tests are located under the test directory and can be run with pytest.
Integration tests
Integration tests are stored in the main repository (ome/openmicroscopy) and depend on the OMERO integration testing framework. Reading about Running and writing tests in the OMERO documentation is essential.
License
OMERO.py is released under the GPL v2.
Copyright
2009-2019, The Open Microscopy Environment, Glencoe Software, Inc.
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