Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-0.2.16.tar.gz (93.1 kB view details)

Uploaded Source

Built Distributions

ontobio-0.2.16-py3.5.egg (132.9 kB view details)

Uploaded Source

ontobio-0.2.16-py3-none-any.whl (138.0 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-0.2.16.tar.gz.

File metadata

  • Download URL: ontobio-0.2.16.tar.gz
  • Upload date:
  • Size: 93.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for ontobio-0.2.16.tar.gz
Algorithm Hash digest
SHA256 e3f0a4ad9055fc24366cc9dcd237c52aced969507c25aadd3205b3a546e177a6
MD5 25914afcfbbbef49db53bffecad8130b
BLAKE2b-256 21fee0069ec604e65fba537c6d8640e2af491ecf3ebc16fdd7a74c054b49877d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-0.2.16-py3.5.egg.

File metadata

  • Download URL: ontobio-0.2.16-py3.5.egg
  • Upload date:
  • Size: 132.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for ontobio-0.2.16-py3.5.egg
Algorithm Hash digest
SHA256 75f6dc865d91d983a7a1a5ba8ab65cdd7f6b388b0321cb9fb49e5a5d33106544
MD5 70d98c1fb26758da96dfd3e1c195e9ac
BLAKE2b-256 6203cc9015861aa0cfd89a4957d4e615132b293f7c92806bcab191443cce96fa

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-0.2.16-py3-none-any.whl.

File metadata

File hashes

Hashes for ontobio-0.2.16-py3-none-any.whl
Algorithm Hash digest
SHA256 e1db2d1f87967ed595dcc45f74a059ac44ba04e87ffab9d7f985223e4925cf2a
MD5 a576a19fa12c9fd0f06a66482181211b
BLAKE2b-256 1f8e987535c677d21581e002702d9d0ea3e2d090f9be3ff6dfb313ae1b29cd27

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page