Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

This version

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-0.2.37.tar.gz (114.0 kB view details)

Uploaded Source

Built Distributions

ontobio-0.2.37-py3.6.egg (145.8 kB view details)

Uploaded Source

ontobio-0.2.37-py3-none-any.whl (149.3 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-0.2.37.tar.gz.

File metadata

  • Download URL: ontobio-0.2.37.tar.gz
  • Upload date:
  • Size: 114.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for ontobio-0.2.37.tar.gz
Algorithm Hash digest
SHA256 707851aa68d1ebc9b545551c291d86658f6c448d5e815a32a3589746bb1d5e43
MD5 dae72b445d48a6850939cf616a957e08
BLAKE2b-256 c81611006e8e89158de6f79d57faafb53b482b91bfad58340b927cd16d154ab3

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-0.2.37-py3.6.egg.

File metadata

  • Download URL: ontobio-0.2.37-py3.6.egg
  • Upload date:
  • Size: 145.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for ontobio-0.2.37-py3.6.egg
Algorithm Hash digest
SHA256 f3807aa58f993d70c9fb27ac6a2f1abb7e1a0cd3d538f5616d8339e81c7a7d96
MD5 3330b3e91074ae36a7013f443e80e078
BLAKE2b-256 d33e14967de99e017a5afac53613b80db0f27e56f287247a26a59195f29aa405

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-0.2.37-py3-none-any.whl.

File metadata

File hashes

Hashes for ontobio-0.2.37-py3-none-any.whl
Algorithm Hash digest
SHA256 9cf87c3134b0c105790cd7386a776774eb5584ba1c25606a27065607118fda1b
MD5 b5de9aff2edfb05cd21572be53a5cedc
BLAKE2b-256 3c249968fd04c60227fd1852fdb2bd2a2da08c5319c83d76714c2df686677017

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page