Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.10.1.tar.gz (154.7 kB view details)

Uploaded Source

Built Distributions

ontobio-1.10.1-py3.7.egg (201.8 kB view details)

Uploaded Source

ontobio-1.10.1-py3-none-any.whl (207.4 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.10.1.tar.gz.

File metadata

  • Download URL: ontobio-1.10.1.tar.gz
  • Upload date:
  • Size: 154.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.1.tar.gz
Algorithm Hash digest
SHA256 dcbdbf32ddb8e63bc8612969d26feebb94c5d9f8e91eacc4077a65608ba97850
MD5 7204f07cdd3dea9b39bbe57bf57c9677
BLAKE2b-256 5c5056fd607244939f9a7e95c2b077fc8e04b5a3f3258d5d0b81137f4b6cd385

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.10.1-py3.7.egg.

File metadata

  • Download URL: ontobio-1.10.1-py3.7.egg
  • Upload date:
  • Size: 201.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.1-py3.7.egg
Algorithm Hash digest
SHA256 3fe58d199a1be217345627f5c464ee941b3d7e282fb92d9930b5db69e6ccd3da
MD5 9d490685485ce8aa8ba9223f6c6f450f
BLAKE2b-256 a9332fa1f4e14158a99aa1779c1b975cb58b91ad1d08a32eb5eda9ed89a97a6d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.10.1-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.10.1-py3-none-any.whl
  • Upload date:
  • Size: 207.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.1-py3-none-any.whl
Algorithm Hash digest
SHA256 fed717c2817323c4079e2a303a8cdb8946ef8e2f4de27c5a80868e43831aa6a1
MD5 b868d0b2aa8ae38e43ac222c0419e481
BLAKE2b-256 2ee6acbcb2fdeef18eba9eecfd40f436ab9623c9cc5a069389b5688bb0cd452d

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page