Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.10.52.tar.gz (154.2 kB view details)

Uploaded Source

Built Distributions

ontobio-1.10.52-py3.7.egg (209.2 kB view details)

Uploaded Source

ontobio-1.10.52-py3-none-any.whl (214.9 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.10.52.tar.gz.

File metadata

  • Download URL: ontobio-1.10.52.tar.gz
  • Upload date:
  • Size: 154.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.52.tar.gz
Algorithm Hash digest
SHA256 83cd77e849445fdc368a74454cbf00647d8f11d1cad117c71c5622233cb6f2e0
MD5 0e14e1083e0767e1e478d86beb2252c7
BLAKE2b-256 20a31fd0da64858d8c814b940f5d2ef24363a1524839a0f471648b661ff852f5

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.10.52-py3.7.egg.

File metadata

  • Download URL: ontobio-1.10.52-py3.7.egg
  • Upload date:
  • Size: 209.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.52-py3.7.egg
Algorithm Hash digest
SHA256 7382eb3d834cd6948fe0382be529a01200280f74939485e3f3462397a4cdcd7c
MD5 ab4d4fb93510e1891d7f991f849813ad
BLAKE2b-256 0e6d59c8dcd417338d822e2735f95b010db292f98e6c8813697a9abf6bffcd7c

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.10.52-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.10.52-py3-none-any.whl
  • Upload date:
  • Size: 214.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.10.52-py3-none-any.whl
Algorithm Hash digest
SHA256 0e3d94809cc8b5ad5c8f6e2bc1f19a9d0b4ae4d549899e7a03503a9f11c2e11f
MD5 ecd5884e63c0b2f1cd235b3354b229f0
BLAKE2b-256 26adb03ac918533f52efd5b3b889ab89df434e567322659088c197a8fd8eddb8

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page