Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.12.1.tar.gz (163.9 kB view details)

Uploaded Source

Built Distributions

ontobio-1.12.1-py3.7.egg (216.3 kB view details)

Uploaded Source

ontobio-1.12.1-py3-none-any.whl (222.2 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.12.1.tar.gz.

File metadata

  • Download URL: ontobio-1.12.1.tar.gz
  • Upload date:
  • Size: 163.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.12.1.tar.gz
Algorithm Hash digest
SHA256 a7dc2d75a899566460a7ff79f5f50f516c5851f5f5747a640c4abb5b2ec622a5
MD5 051899dc0b4847b5fae20fab7ce569bf
BLAKE2b-256 9ef749f46376ca9ddda85e8ada2a3bbe70f460de6a484471895633964c8a75ee

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.12.1-py3.7.egg.

File metadata

  • Download URL: ontobio-1.12.1-py3.7.egg
  • Upload date:
  • Size: 216.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.12.1-py3.7.egg
Algorithm Hash digest
SHA256 2914bfca7233c27fdec4dcaea0c439cb2e1389e09ef4c0c9848eb5834229803b
MD5 813466e74283b6a93d42daf5d59fca22
BLAKE2b-256 f0efd997096218ccd2abcdb5753efc8bf4892625a1e0afe8a360474b4af2d2dd

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.12.1-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.12.1-py3-none-any.whl
  • Upload date:
  • Size: 222.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.12.1-py3-none-any.whl
Algorithm Hash digest
SHA256 d5e785d813622034d9bd4d0a36b7effdf1d0a2b44b3196c62cc3b92a3ce24c48
MD5 b1847e82029f2d7d5b3b5d282c086bbf
BLAKE2b-256 e9ccf3ebb0450b744925a37d911377490ff15546e4f12a62b0221565e96d9050

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page