Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.15.4.tar.gz (173.0 kB view details)

Uploaded Source

Built Distributions

ontobio-1.15.4-py3.7.egg (228.6 kB view details)

Uploaded Source

ontobio-1.15.4-py3-none-any.whl (234.7 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.15.4.tar.gz.

File metadata

  • Download URL: ontobio-1.15.4.tar.gz
  • Upload date:
  • Size: 173.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.15.4.tar.gz
Algorithm Hash digest
SHA256 034584ed07c1d587dd40739ceefa977ebac4ab8975274802b018f4897febe19f
MD5 6dd2dfdcbbdd52f79940b00514c4cd88
BLAKE2b-256 6a34e9a4df599fb8cd4d5714af317010776260bb9019322566242069b9a58835

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.15.4-py3.7.egg.

File metadata

  • Download URL: ontobio-1.15.4-py3.7.egg
  • Upload date:
  • Size: 228.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.15.4-py3.7.egg
Algorithm Hash digest
SHA256 9fd804cbb5fc8085a750ac24528759020a97980603cc136e329e1c55f3dda7dd
MD5 84e8c3e9eb0a06df29f16ab75f32cceb
BLAKE2b-256 9c95c523c196fab974c3b496a263cd7fdc52efdedc5ca52f3cc746b2b36b7a90

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.15.4-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.15.4-py3-none-any.whl
  • Upload date:
  • Size: 234.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.0

File hashes

Hashes for ontobio-1.15.4-py3-none-any.whl
Algorithm Hash digest
SHA256 55b9aea80e6631eeefe41b871845aef1ee2e05da048c141d748b7dc63de62cea
MD5 4f62e396f2066844bfcf5f4796b27821
BLAKE2b-256 8cc6000296dbaa6496ef2b6ccee418c51717b0bb6cdcfdb680c0856958275526

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page