Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.17.2.tar.gz (174.9 kB view details)

Uploaded Source

Built Distributions

ontobio-1.17.2-py3.6.egg (218.8 kB view details)

Uploaded Source

ontobio-1.17.2-py3-none-any.whl (224.7 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.17.2.tar.gz.

File metadata

  • Download URL: ontobio-1.17.2.tar.gz
  • Upload date:
  • Size: 174.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.43.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.17.2.tar.gz
Algorithm Hash digest
SHA256 3e752e5a24511d9d4ec6422db697b855843134aa28535ca37b86ac6973a859c9
MD5 86deab888478ff9e8579a4e03f5fa19d
BLAKE2b-256 16d1ef60442c99daff86a427562c73ecc7a5c216b1c2152b748ebe92f027f647

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.17.2-py3.6.egg.

File metadata

  • Download URL: ontobio-1.17.2-py3.6.egg
  • Upload date:
  • Size: 218.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.43.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.17.2-py3.6.egg
Algorithm Hash digest
SHA256 174d527c887e3960318dc409c12aa3087cc4c130883af574ce168ff484169386
MD5 f68bc9a1fb3d0e0911c7217189195133
BLAKE2b-256 7bb86c9672b1c86f6c2b917dfaf8c03df6d6f0735d320ffc9900cc7b9705ba2d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.17.2-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.17.2-py3-none-any.whl
  • Upload date:
  • Size: 224.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.43.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.17.2-py3-none-any.whl
Algorithm Hash digest
SHA256 0c1be9a8f011773df5254ba6a31f3982526e5b8bb4e4f82c0ffd4a38658ecf91
MD5 400c3842956e4b81c5a7ccc2b36b7e73
BLAKE2b-256 ff5343c85672506a2204ea6014e86e8fd8630e1e40eddcef5530fb977394085f

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page