Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.19.0.tar.gz (178.9 kB view details)

Uploaded Source

Built Distributions

ontobio-1.19.0-py3.6.egg (223.2 kB view details)

Uploaded Source

ontobio-1.19.0-py3-none-any.whl (229.1 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.19.0.tar.gz.

File metadata

  • Download URL: ontobio-1.19.0.tar.gz
  • Upload date:
  • Size: 178.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.47.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.19.0.tar.gz
Algorithm Hash digest
SHA256 c48541ed71f6da571d915e28b3c1a690d904b1d85ad4ebad287b567323dc1759
MD5 064968861057b5b1bea87a089ce8954f
BLAKE2b-256 0e6188c4d671eea9627ebe0f3c4b565491a824b98f9b52323d305280767b827d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.19.0-py3.6.egg.

File metadata

  • Download URL: ontobio-1.19.0-py3.6.egg
  • Upload date:
  • Size: 223.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.47.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.19.0-py3.6.egg
Algorithm Hash digest
SHA256 dd9cdacfbca1bc08f68889e3e121c15dcc0384181042430790e1f654d1034fb8
MD5 e1de12d209d36146682acce11cba4a7b
BLAKE2b-256 b04cddcf3189a661fad51c7402960d94821f4e70bd831be340cc9c5b2f6df3e0

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.19.0-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.19.0-py3-none-any.whl
  • Upload date:
  • Size: 229.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.47.0 CPython/3.6.9

File hashes

Hashes for ontobio-1.19.0-py3-none-any.whl
Algorithm Hash digest
SHA256 01de16c5cef7b379f5adff11080079f7fbff3245780014b06e354166b2911874
MD5 42695a76b2aaa1a96daad491397db214
BLAKE2b-256 87fe9d2c20087986b82b3e4d45870094e173c50f91f3a0cd12452d9103c21e05

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page